Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G392300.1 | Wheat | nucleus | 97.02 | 97.02 |
| TraesCS6B01G432500.1 | Wheat | nucleus | 96.57 | 96.57 |
| HORVU6Hr1G091110.8 | Barley | cytosol, nucleus, plastid | 85.69 | 74.0 |
| TraesCS3D01G533700.1 | Wheat | nucleus, plastid | 43.67 | 45.08 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 30.1 | 31.32 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 30.1 | 31.03 |
| AT3G46590.2 | Thale cress | nucleus | 24.74 | 30.02 |
| Os02t0817800-03 | Rice | nucleus | 28.32 | 30.02 |
| TraesCS4D01G208600.1 | Wheat | nucleus | 30.25 | 29.38 |
| AT5G59430.2 | Thale cress | nucleus | 25.04 | 29.07 |
| Bra002566.1-P | Field mustard | nucleus | 24.59 | 29.0 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 29.21 | 28.28 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 29.81 | 28.09 |
| VIT_06s0004g04940.t01 | Wine grape | nucleus | 29.06 | 28.02 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 29.36 | 27.98 |
| PGSC0003DMT400060234 | Potato | nucleus | 28.17 | 27.43 |
| CDY06712 | Canola | nucleus | 24.14 | 27.18 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 3.73 | 27.17 |
| Bra015585.1-P | Field mustard | nucleus | 23.99 | 26.92 |
| Solyc05g054410.2.1 | Tomato | nucleus | 27.57 | 26.85 |
| KRH24782 | Soybean | nucleus | 25.04 | 26.75 |
| KRG99966 | Soybean | nucleus | 23.99 | 26.7 |
| CDY10282 | Canola | nucleus | 23.84 | 26.67 |
| KRH49110 | Soybean | nucleus | 23.99 | 26.57 |
| KRG97906 | Soybean | nucleus | 26.68 | 26.56 |
| Bra030689.1-P | Field mustard | nucleus | 23.99 | 26.52 |
| PGSC0003DMT400005476 | Potato | nucleus | 27.27 | 26.45 |
| Solyc06g005590.2.1 | Tomato | nucleus | 27.12 | 26.42 |
| Solyc04g011650.2.1 | Tomato | nucleus | 26.23 | 26.39 |
| CDY15617 | Canola | nucleus | 23.1 | 26.27 |
| PGSC0003DMT400077969 | Potato | nucleus | 27.12 | 26.19 |
| AT1G07540.1 | Thale cress | nucleus | 24.44 | 26.03 |
| PGSC0003DMT400016260 | Potato | nucleus | 25.93 | 25.97 |
| VIT_08s0007g00500.t01 | Wine grape | nucleus | 26.38 | 25.76 |
| KRH30983 | Soybean | nucleus | 25.78 | 25.48 |
| Solyc06g076270.2.1 | Tomato | nucleus | 26.38 | 25.29 |
| KRH29783 | Soybean | nucleus | 25.93 | 25.22 |
| KRH23087 | Soybean | nucleus | 26.38 | 24.65 |
| CDX86474 | Canola | nucleus | 20.27 | 24.42 |
| KRH10245 | Soybean | nucleus | 25.63 | 23.89 |
| Solyc12g027690.1.1 | Tomato | extracellular | 5.37 | 23.23 |
| Solyc12g027710.1.1 | Tomato | cytosol | 7.9 | 21.9 |
| CDY33039 | Canola | nucleus | 24.59 | 19.95 |
| CDX80268 | Canola | nucleus | 24.44 | 19.81 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 |
| PFscan:PS50053 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF37 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | SUPFAM:SSF54236 | EnsemblPlantsGene:TraesCS6D01G378100 | EnsemblPlants:TraesCS6D01G378100.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| TIGR:cd01769 | TIGR:cd11660 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:+:460648318..460652809
Molecular Weight (calculated)
73024.3 Da
IEP (calculated)
7.404
GRAVY (calculated)
-0.507
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST ESDQDVAAAS HNSDRASVKA EQFDEAPQLN STALENDCCR
101: GYTVGCDGIC ASLGQTSIRK TEDLSTQNVA DTVEGSLIER ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL LDCGLGTIPE YGTIGVCHPC
201: FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV KPSVLNSESS SGVHFGGHDN GHRASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKDGYL
301: PNKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA
401: SEGCNVKFII KSFNIPELSI EVPENATVGS LKRIVMDAVT SKVEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG FTLECEAKQD SRPSGIAPEE
501: MDSAGPSVVN PLSKIKFEQP FISCTLGDYP YEGAAQVRPE ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK
601: NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQDLLDRV LAAQAYWTVH HAKRDEEEGR D
101: GYTVGCDGIC ASLGQTSIRK TEDLSTQNVA DTVEGSLIER ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL LDCGLGTIPE YGTIGVCHPC
201: FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV KPSVLNSESS SGVHFGGHDN GHRASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKDGYL
301: PNKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA
401: SEGCNVKFII KSFNIPELSI EVPENATVGS LKRIVMDAVT SKVEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG FTLECEAKQD SRPSGIAPEE
501: MDSAGPSVVN PLSKIKFEQP FISCTLGDYP YEGAAQVRPE ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK
601: NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQDLLDRV LAAQAYWTVH HAKRDEEEGR D
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Arabidopsis Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.