Factsheet for Solyc06g076270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077969	Potato	nucleus	80.71	81.3
Solyc06g005590.2.1	Tomato	nucleus	57.43	58.35
VIT_06s0004g04940.t01	Wine grape	nucleus	50.0	50.29
KRH10245	Soybean	nucleus	44.86	43.61
KRH23087	Soybean	nucleus	44.71	43.59
KRH29783	Soybean	nucleus	42.43	43.04
GSMUA_Achr8P20810_001	Banana	nucleus	40.0	43.01
KRH24782	Soybean	nucleus	38.14	42.52
Solyc12g027690.1.1	Tomato	extracellular	9.14	41.29
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.0	41.24
Solyc05g054410.2.1	Tomato	nucleus	39.71	40.35
GSMUA_Achr7P15090_001	Banana	nucleus	39.29	39.68
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	40.29	39.61
Os03t0274300-01	Rice	nucleus	36.86	37.28
GSMUA_Achr10P...	Banana	cytosol, plastid	4.86	36.96
KXG39691	Sorghum	nucleus, plastid	37.0	36.69
Solyc04g011650.2.1	Tomato	nucleus	34.86	36.58
TraesCS4B01G207700.1	Wheat	nucleus	36.0	36.42
HORVU4Hr1G059800.2	Barley	nucleus	35.86	36.32
TraesCS4A01G096700.1	Wheat	nucleus	35.86	36.32
TraesCS4D01G208600.1	Wheat	nucleus	35.71	36.18
TraesCS3D01G533700.1	Wheat	nucleus, plastid	32.29	34.77
TraesCS3A01G528500.1	Wheat	nucleus, plastid	32.0	34.41
HORVU3Hr1G115540.2	Barley	nucleus, plastid	32.14	34.19
EES10985	Sorghum	mitochondrion	31.71	34.15
TraesCS3B01G597500.1	Wheat	nucleus, plastid	31.71	34.1
Zm00001d047808_P001	Maize	nucleus, plastid	34.57	32.4
Zm00001d028608_P006	Maize	nucleus	32.0	32.18
Solyc12g027710.1.1	Tomato	cytosol	9.57	27.69
TraesCS6B01G432500.1	Wheat	nucleus	25.43	26.53
TraesCS6A01G392300.1	Wheat	nucleus	25.29	26.38
TraesCS6D01G378100.1	Wheat	nucleus	25.29	26.38
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	22.71	20.46
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.43	20.4
Os02t0817800-03	Rice	nucleus	11.71	12.95

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003691	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4C9Y7	InterPro:Myb_dom	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236
EnsemblPlantsGene:Solyc06g076270.2	EnsemblPlants:Solyc06g076270.2.1	UniParc:UPI000276710A	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:47387879..47391784

Molecular Weight (calculated)

77125.1 Da

IEP (calculated)

9.723

GRAVY (calculated)

-0.647

Length

700 amino acids

Sequence
(BLAST)

001: MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIKRKADGNG TCHFDLLATV AGKLLGEGES SPDSKGSVKG KEKGAIVKDE KVKEAEDKSL KEKSYTEGCY
101: ERGFFISELV SQAPVVNRSL SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFCSKTE REASGCGVFS SCTLDTENDK QMKIELSNKA
201: KVLTDKGTAI SSSKFPDVWD KKPSTLVTSD ENVKLSLSTY PAPSRSFPVI RDNVKLAYKD DDENSGCTQP STPNKASGAA PCLRDRPIKK LLASKYWKEN
301: LKFDDEGHAN SGGKAMHVYY NRNIGYKRDG YKHQRSQRDF PFKKRKVFKC GSFSNSDGEM STDGISSSPT NDLHGNASGS SKASSGGCAA VGTSVFSGGR
401: PFLRPGDSHV KFRIKSFKVP ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL DALGFSLEPN PVQTSQPLGQ
501: DCRSCVLPYE TPQPLTRCPS PSTVIHTGIH QGRSDDHTGT SLSTFLESDH ESAPSPHYAA LEKISANSRA LVPLTAVNAE ALSAVPLRKP KRSEATQRRI
601: RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM KQPSETYLLL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.