CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028608_P006	Maize	nucleus	82.44	83.62
Zm00001d047808_P001	Maize	nucleus, plastid	83.43	78.85
Os03t0274300-01	Rice	nucleus	74.5	76.01
HORVU4Hr1G059800.2	Barley	nucleus	73.37	74.96
TraesCS4D01G208600.1	Wheat	nucleus	72.8	74.38
TraesCS4B01G207700.1	Wheat	nucleus	72.8	74.28
TraesCS4A01G096700.1	Wheat	nucleus	72.66	74.24
GSMUA_Achr8P20810_001	Banana	nucleus	43.63	47.31
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	42.63	46.67
VIT_06s0004g04940.t01	Wine grape	nucleus	44.9	45.55
GSMUA_Achr7P15090_001	Banana	nucleus	44.05	44.88
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	43.91	43.54
Bra015585.1-P	Field mustard	nucleus	34.99	41.3
CDY06712	Canola	nucleus	34.84	41.28
AT3G46590.2	Thale cress	nucleus	32.01	40.87
CDY10282	Canola	nucleus	34.42	40.5
PGSC0003DMT400005476	Potato	nucleus	39.24	40.03
Solyc06g005590.2.1	Tomato	nucleus	38.95	39.91
AT1G07540.1	Thale cress	nucleus	35.27	39.52
Solyc05g054410.2.1	Tomato	nucleus	38.24	39.19
AT5G59430.2	Thale cress	nucleus	31.87	38.93
CDY15617	Canola	nucleus	32.44	38.81
KRG99966	Soybean	nucleus	33.14	38.81
EES10985	Sorghum	mitochondrion	35.69	38.77
Bra030689.1-P	Field mustard	nucleus	33.14	38.55
KRH10245	Soybean	nucleus	39.24	38.47
PGSC0003DMT400060234	Potato	nucleus	37.54	38.46
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	38.1	38.21
KRH29783	Soybean	nucleus	37.25	38.12
KRH23087	Soybean	nucleus	38.67	38.02
KRH49110	Soybean	nucleus	32.29	37.62
Bra002566.1-P	Field mustard	nucleus	30.17	37.43
Solyc06g076270.2.1	Tomato	nucleus	36.69	37.0
PGSC0003DMT400077969	Potato	nucleus	36.4	36.98
VIT_08s0007g00500.t01	Wine grape	nucleus	35.98	36.97
KRH24782	Soybean	nucleus	32.44	36.47
KRH30983	Soybean	nucleus	34.84	36.23
GSMUA_Achr10P...	Banana	cytosol, plastid	4.67	35.87
KRG97906	Soybean	nucleus	34.14	35.76
Solyc04g011650.2.1	Tomato	nucleus	33.29	35.23
PGSC0003DMT400016260	Potato	nucleus	33.43	35.22
CDX86474	Canola	nucleus	27.48	34.83
Solyc12g027690.1.1	Tomato	extracellular	7.22	32.9
Solyc12g027710.1.1	Tomato	cytosol	8.92	26.03
CDY33039	Canola	nucleus	30.03	25.63
CDX80268	Canola	nucleus	29.89	25.48

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	UniProt:A0A1B6QP34	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	ProteinID:KXG39690.1
EnsemblPlants:KXG39691	ProteinID:KXG39691	ProteinID:KXG39691.1	InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF61	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3001G421500	SUPFAM:SSF46689
SUPFAM:SSF54236	UniParc:UPI00081ADC13	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:70231972..70237491

Molecular Weight (calculated)

77347.6 Da

IEP (calculated)

9.566

GRAVY (calculated)

-0.635

Length

706 amino acids

Sequence
(BLAST)

001: MTSHEQRNHQ LLTNPLVNFK QPKRRAEMVF QKRSSSEMES CGGGQVAEMP RVPKSARGKR SVRKKEAQSP AQMSAFDLLA TVAGKLLDEG VGSLGNMSAG
101: ASALAACAKD VRVKQEQCDE EMKQFKHEVT DQDSCNESAI LPHIAFQRAV NNARTEDPKA KSEAQDKESS MISCTKAELG CNFGVIADRW SPESVESGAF
201: TGDAVASLMP TAPAGFHKNA PEMYNLLDSM DVDAKPPPLV SSDSTGEMPL YGDKIHRSTS LPRGPKGVGG FAVDRDDDDD KSSGCTHPST TTNRDFRSNC
301: TAEYSRVRKL LTSKYRKVAP ARIHKSDLSY SDVERKPSFR NKKMHYTRQR TQRSTFKRRK LFDRHSVLAS EFGAANGKGS TKVTGRDSHA EANKGTNSMP
401: FQKSCVSNDC HVKLRIKSFK VPELLVEIPE SATVGSLKKT VLEAVTAILG GGLRVGVLHH GKKVRDDSKT LIQAGIGQDD MLDNLGFSLE PNCTQNPQVQ
501: VPEDISFLET IDTTEPLARI APADSCSKHG EVDVSQELAL TPLAMNYQGS DHDSVHSPRG VSSPDKVSTH SRALVPVPAA DPNAGAVVPA NKSKRSPEQG
601: QRRIRRPFSV AEVEALVLAV EKLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTASI SPQQRRGEPV PQELLDRVLA AQAYWSQQQA KLQPKTPPLA
701: EARLLT

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.