Factsheet for Solyc12g027710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g027690.1.1	Tomato	extracellular	29.75	46.45
Solyc06g005590.2.1	Tomato	nucleus	31.82	11.18
GSMUA_Achr8P20810_001	Banana	nucleus	28.1	10.45
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	26.86	10.08
Solyc06g076270.2.1	Tomato	nucleus	27.69	9.57
Os03t0274300-01	Rice	nucleus	26.03	9.1
GSMUA_Achr7P15090_001	Banana	nucleus	25.62	8.95
KXG39691	Sorghum	nucleus, plastid	26.03	8.92
Zm00001d028608_P006	Maize	nucleus	25.62	8.91
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	25.62	8.71
Solyc04g011650.2.1	Tomato	nucleus	23.55	8.55
TraesCS4D01G208600.1	Wheat	nucleus	24.38	8.54
HORVU4Hr1G059800.2	Barley	nucleus	24.38	8.54
TraesCS4A01G096700.1	Wheat	nucleus	24.38	8.54
TraesCS4B01G207700.1	Wheat	nucleus	24.38	8.53
Solyc05g054410.2.1	Tomato	nucleus	23.97	8.42
TraesCS6A01G392300.1	Wheat	nucleus	22.73	8.2
Zm00001d047808_P001	Maize	nucleus, plastid	25.21	8.17
EES10985	Sorghum	mitochondrion	21.9	8.15
TraesCS6B01G432500.1	Wheat	nucleus	21.9	7.9
TraesCS6D01G378100.1	Wheat	nucleus	21.9	7.9
TraesCS3B01G597500.1	Wheat	nucleus, plastid	19.01	7.07
TraesCS3A01G528500.1	Wheat	nucleus, plastid	19.01	7.07
HORVU3Hr1G115540.2	Barley	nucleus, plastid	19.01	6.99
TraesCS3D01G533700.1	Wheat	nucleus, plastid	18.59	6.92
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	21.07	6.56
GSMUA_Achr10P...	Banana	cytosol, plastid	2.07	5.43
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	19.01	5.07
Os02t0817800-03	Rice	nucleus	11.16	4.27

Protein Annotations

MapMan:35.2	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627
UniProt:K4DDT9	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	EnsemblPlantsGene:Solyc12g027710.1	EnsemblPlants:Solyc12g027710.1.1	UniParc:UPI0002769B6B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:25785659..25788593

Molecular Weight (calculated)

27431.1 Da

IEP (calculated)

9.878

GRAVY (calculated)

-0.289

Length

242 amino acids

Sequence
(BLAST)

001: MSQFEVKVVR FPYEVTRIDK NSTSEASKLD VKLYYPTERA AKIKLRRHNL HTQLSLEEKE MLSSRLQVKM SRSVGFGRLT EHAKEAYCSL FGVELPTLKA
101: LTIKESSVTK KAKRTVMEAK KEILDGGLWI CVVFKINKVR DDNKTLFHAG ISHDDNFDAL GFSLEPHPSR ASPPLGPEGR SHVLPCDTPQ LLKSLILHFF
201: FQSNSSSYHT YTSSPTSVFL SRTSDRASFL GHIILYAMLY AM

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.