Factsheet for Zm00001d025679_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10985	Sorghum	mitochondrion	53.14	74.15
TraesCS3B01G597500.1	Wheat	nucleus, plastid	34.07	47.47
HORVU3Hr1G115540.2	Barley	nucleus, plastid	33.96	46.81
TraesCS3D01G533700.1	Wheat	nucleus, plastid	33.41	46.62
TraesCS3A01G528500.1	Wheat	nucleus, plastid	33.41	46.54
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	23.37	32.87
GSMUA_Achr8P20810_001	Banana	nucleus	23.15	32.26
Zm00001d028608_P006	Maize	nucleus	24.15	31.47
VIT_06s0004g04940.t01	Wine grape	nucleus	23.93	31.18
GSMUA_Achr7P15090_001	Banana	nucleus	23.15	30.3
AT3G46590.2	Thale cress	nucleus	17.64	28.93
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	22.71	28.93
AT5G59430.2	Thale cress	nucleus	18.3	28.72
Bra002566.1-P	Field mustard	nucleus	17.97	28.65
Solyc06g005590.2.1	Tomato	nucleus	20.95	27.58
AT1G07540.1	Thale cress	nucleus	19.07	27.46
PGSC0003DMT400005476	Potato	nucleus	20.95	27.46
KRH24782	Soybean	nucleus	18.96	27.39
CDY06712	Canola	nucleus	17.86	27.18
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	21.06	27.13
Zm00001d047808_P001	Maize	nucleus, plastid	22.05	26.77
Bra015585.1-P	Field mustard	nucleus	17.64	26.76
KRH29783	Soybean	nucleus	20.29	26.67
PGSC0003DMT400060234	Potato	nucleus	20.18	26.56
CDY15617	Canola	nucleus	17.2	26.44
Solyc06g076270.2.1	Tomato	nucleus	20.4	26.43
Solyc05g054410.2.1	Tomato	nucleus	20.07	26.42
CDY10282	Canola	nucleus	17.42	26.33
PGSC0003DMT400077969	Potato	nucleus	20.07	26.19
GSMUA_Achr10P...	Banana	cytosol, plastid	2.65	26.09
Bra030689.1-P	Field mustard	nucleus	17.42	26.03
KRG97906	Soybean	nucleus	19.29	25.96
KRH23087	Soybean	nucleus	20.18	25.49
KRH30983	Soybean	nucleus	19.07	25.48
PGSC0003DMT400016260	Potato	nucleus	18.74	25.37
Solyc04g011650.2.1	Tomato	nucleus	18.63	25.34
Solyc12g027690.1.1	Tomato	extracellular	4.3	25.16
VIT_08s0007g00500.t01	Wine grape	nucleus	18.85	24.89
KRH10245	Soybean	nucleus	19.63	24.72
KRH49110	Soybean	nucleus	16.43	24.59
KRG99966	Soybean	nucleus	16.32	24.54
CDX86474	Canola	nucleus	14.11	22.98
CDY33039	Canola	nucleus	19.4	21.28
CDX80268	Canola	nucleus	19.07	20.89
Solyc12g027710.1.1	Tomato	cytosol	5.07	19.01

Protein Annotations

Gene3D:1.10.246.220	Gene3D:1.25.40.10	MapMan:15.5.2.2	UniProt:A0A1D6J8K3	ProteinID:AQK44249.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR011990
PFAM:PF08238	PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	SMART:SM00671	SUPFAM:SSF46689	SUPFAM:SSF54236
SUPFAM:SSF81901	InterPro:Sel1-like	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000844985E	InterPro:Ubiquitin-like_domsf	EnsemblPlantsGene:Zm00001d025679
EnsemblPlants:Zm00001d025679_P001	EnsemblPlants:Zm00001d025679_T001	SEG:seg	:	:	:

Description

Putative MYB DNA-binding domain superfamily protein

Coordinates

chr10:+:126089661..126095930

Molecular Weight (calculated)

98694.9 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.437

Length

907 amino acids

Sequence
(BLAST)

001: MQGKRSTRRK KDENDDMCAM DLLATVAGKL LADQDNSSSV PNTSAAKAKK RKSVKEEHFD EIPPLKNVAM EKDVGSGSVS AFPRQAKNCL AENSSTRNGA
101: DTVLESLTVK SNMLAKIPEC GSYGIHHAGS SSSAEPEQVH QAEPKVSRRQ ADGHPVAYGI FNSVDVDGKP PALVSSDSSS CVPLSSHDKE HQTSSLYRGV
201: VQYTADREDD ENSSGCTHPS TIESKGCKPQ YLGNHRIRKL LASKVRKAAR NKICGGIPSK KICGGLSKKG SKLNLCGKKM STTHQKVQRM IFKKKKLTHR
301: TSFAKEMLTE ASGTSFAMEG QNKSCEAENY HGIRGYCSVV FVAVESITHH FPLFSVKLRI KSFNIPELFI KVPENATIGS LKRAVMDVVN SIMEGGLRVG
401: VLLQGKDIQD DNKTLCQAGI CHDKKLNNID FTLECERERE PPSGVIIQEQ MDFLTTDMVE PLARMKCEEP FPEADVGDDS QQPRAPYRSR SLSDLYSVHC
501: PVQMASQDTT ASSQAIVPVS PAPSDVGALA IVPLCKSKGS EVGQRRMRRP FTVGEVEALV GAVEQLGTGR WRAVKTLAFD SIDHRTYVDL KGADFSALPP
601: DLVHRALAAA CASDVAAASR ACRAWWDALR PLREAAALHA YGRRVKHDPV TGARAVAAAA ASRGGGERVE TERQRALGLF RRAARLGSAA AMVDAGLMCW
701: EDGRREEAVG YYRSAADLGH PIGMCNLGVS YLEADPPKAE EAIRWFYPSA SAGNARAQYN LGLCLQNGKG VKRNQKEAAK WYLRAAEGGN VRAMYNISLC
801: YSYGEGLAQD PVRAKRWLQL AADCGHKKAL YECGIKLCAS GCAGNIGKAG DKVKCLMYLE LATRRGEAAA AHMRDVILES LSVVNAQRAM SDADKWKPRT
901: LHPRPRR

Best Arabidopsis Sequence Match ( AT1G70590.1 )
(BLAST)

001: MKQRTWPCRS EGSRFSSLSF LKPHDKDKRS RISSINKATA KSTTSSRSSS SSSSSRPPSN EFGDFSMLPY DILMKIAAPF SHPNLQAASL VCKSWRDALK
101: PLRESMLLIR WGKKYKHGRG GVRANLDKAL DSFLKGAMRG STLAMVDAGL VYWERGEKEK AVNLYRRASE LGDAVGQCNL GIAYLQVQPS NPKEAMKWLK
201: QSAENGYVRA QYQLALCLHH GRVVQTNLLE ATKWYLKAAE GGYVRAMYNI SLCYSVGEGL PQNRKLARKW MKRAADHGHS KAQFEHGLAL FSEGEMLKSV
301: LYLELAERGG EAAATPVKEV VHQQLSATFG GQAVHHAIHQ ANNWRPLPVT R

Arabidopsis Description

F-box protein At1g70590 [Source:UniProtKB/Swiss-Prot;Acc:Q94C27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.