Factsheet for TraesCS3D01G533700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G597500.1	Wheat	nucleus, plastid	95.69	95.55
TraesCS3A01G528500.1	Wheat	nucleus, plastid	95.38	95.24
HORVU3Hr1G115540.2	Barley	nucleus, plastid	95.08	93.92
EES10985	Sorghum	mitochondrion	58.15	58.15
TraesCS6D01G378100.1	Wheat	nucleus	45.08	43.67
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	39.38	39.69
GSMUA_Achr8P20810_001	Banana	nucleus	39.69	39.63
AT3G46590.2	Thale cress	nucleus	30.92	36.35
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.38	35.96
VIT_06s0004g04940.t01	Wine grape	nucleus	38.46	35.92
GSMUA_Achr7P15090_001	Banana	nucleus	38.15	35.79
TraesCS4D01G208600.1	Wheat	nucleus	37.54	35.31
CDY06712	Canola	nucleus	31.69	34.56
Bra015585.1-P	Field mustard	nucleus	31.69	34.45
CDY10282	Canola	nucleus	31.54	34.17
AT5G59430.2	Thale cress	nucleus	29.85	33.56
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	46.62	33.41
Solyc06g005590.2.1	Tomato	nucleus	35.38	33.38
PGSC0003DMT400060234	Potato	nucleus	35.38	33.38
PGSC0003DMT400005476	Potato	nucleus	35.54	33.38
Solyc05g054410.2.1	Tomato	nucleus	35.23	33.24
CDY15617	Canola	nucleus	30.0	33.05
AT1G07540.1	Thale cress	nucleus	32.0	33.02
Bra002566.1-P	Field mustard	nucleus	28.77	32.86
Bra030689.1-P	Field mustard	nucleus	30.46	32.62
PGSC0003DMT400077969	Potato	nucleus	34.77	32.52
Solyc06g076270.2.1	Tomato	nucleus	34.77	32.29
KRG99966	Soybean	nucleus	29.85	32.17
VIT_08s0007g00500.t01	Wine grape	nucleus	33.69	31.88
KRH49110	Soybean	nucleus	29.69	31.85
KRH24782	Soybean	nucleus	30.62	31.69
KRH29783	Soybean	nucleus	33.23	31.3
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	33.54	30.97
KRG97906	Soybean	nucleus	32.0	30.86
KRH23087	Soybean	nucleus	34.0	30.78
KRH10245	Soybean	nucleus	34.0	30.69
GSMUA_Achr10P...	Banana	cytosol, plastid	4.31	30.43
KRH30983	Soybean	nucleus	31.54	30.19
CDX86474	Canola	nucleus	25.69	29.98
Solyc04g011650.2.1	Tomato	nucleus	30.46	29.69
PGSC0003DMT400016260	Potato	nucleus	30.31	29.4
CDY33039	Canola	nucleus	28.92	22.73
Solyc12g027690.1.1	Tomato	extracellular	5.38	22.58
CDX80268	Canola	nucleus	28.62	22.46
Solyc12g027710.1.1	Tomato	cytosol	6.92	18.59

Protein Annotations

EnsemblPlants:TraesCS3D01G533700.1	EnsemblPlantsGene:TraesCS3D01G533700	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	TIGR:cd11660	MapMan:15.5.2.2	:	:	:

Description

No Description!

Coordinates

chr3D:-:609085377..609088471

Molecular Weight (calculated)

70743.9 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.522

Length

650 amino acids

Sequence
(BLAST)

001: MVVRKRLDYG SRGHQVPAMP RVPSSARGKR SARRKKDEMS PFDLLATVAG TLLVDHENSS NAPSINAAAL TYARKRKSVK AEQYDDVPSL KSIAVENCIA
101: GSGGVCASPR QANICLAENS STRNGTDPVL ESLTVKPDML VRDSVFSCTK SCNRAHGVGG IPECGSSRSL EATNQVQVQQ PMDGDTTALY SLVSSVDLDG
201: RPPALVSSDS SSGVPLCIHE KDRTTSPLCH AEARHAADRD DDENSSGCTH PCTTGNNKSY MPQYTGDSRI RKMFASKIRK AARNKMCGEM SNKGSKLNLC
301: GKKISTTRQR VQRAMFKRQK PVRRHFTPSS AKGILTEASG ASFSVEGQNP LCGSEDYNVK LRIKSFTIPE LFIEIPENAT VGSLKRTVMD VVTSIIESGL
401: RVGVLLQGKS IQDDNKTLRQ ARICHGENLE NIDFTLECEA GQNSSPGVRI PEEMDFHGAD AMKPLAMVKC EEPFSETKAG YNSQQRVQAS PNRVQSEHGS
501: VHSLFETTAH EASASSQAIV PVASPSSEAL AIVPVCKSKR PVIGQRRIRR PFSLPEVEAL VEAVEQLGTG RWRDVKMLAF DNTDHRTYVD LKDKWKTLVH
601: TASISPQQRR GEPVPQGLLD RVLAAQAYWS QQQQQQLSGK ASGQGCSSSC

Best Arabidopsis Sequence Match ( AT5G59430.3 )
(BLAST)

001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQHLGGRL SFVYYYYY

Arabidopsis Description

TRP1Telomere repeat-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.