Factsheet for TraesCS4D01G208600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G096700.1	Wheat	nucleus	98.84	98.84
TraesCS4B01G207700.1	Wheat	nucleus	98.26	98.12
HORVU4Hr1G059800.2	Barley	nucleus	97.83	97.83
Os03t0274300-01	Rice	nucleus	81.62	81.5
KXG39691	Sorghum	nucleus, plastid	74.38	72.8
Zm00001d028608_P006	Maize	nucleus	66.86	66.38
Zm00001d047808_P001	Maize	nucleus, plastid	68.6	63.45
GSMUA_Achr8P20810_001	Banana	nucleus	42.4	45.01
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	40.96	43.88
GSMUA_Achr7P15090_001	Banana	nucleus	43.13	43.0
VIT_06s0004g04940.t01	Wine grape	nucleus	41.97	41.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.26	41.01
Bra015585.1-P	Field mustard	nucleus	34.73	40.13
CDY06712	Canola	nucleus	34.3	39.77
Solyc06g005590.2.1	Tomato	nucleus	39.22	39.33
AT3G46590.2	Thale cress	nucleus	31.4	39.24
CDY10282	Canola	nucleus	33.72	38.83
PGSC0003DMT400005476	Potato	nucleus	38.78	38.73
TraesCS3D01G533700.1	Wheat	nucleus, plastid	35.31	37.54
AT5G59430.2	Thale cress	nucleus	31.11	37.2
AT1G07540.1	Thale cress	nucleus	33.72	36.98
CDY15617	Canola	nucleus	31.55	36.95
KRH23087	Soybean	nucleus	38.21	36.77
KRH10245	Soybean	nucleus	38.21	36.67
Bra030689.1-P	Field mustard	nucleus	32.13	36.57
Solyc05g054410.2.1	Tomato	nucleus	36.32	36.43
KRH29783	Soybean	nucleus	36.18	36.23
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	36.9	36.22
PGSC0003DMT400060234	Potato	nucleus	35.75	35.85
KRG99966	Soybean	nucleus	31.26	35.82
Solyc06g076270.2.1	Tomato	nucleus	36.18	35.71
PGSC0003DMT400077969	Potato	nucleus	35.89	35.68
Bra002566.1-P	Field mustard	nucleus	29.38	35.68
KRG97906	Soybean	nucleus	34.3	35.16
KRH30983	Soybean	nucleus	34.3	34.9
KRH24782	Soybean	nucleus	31.69	34.87
KRH49110	Soybean	nucleus	30.54	34.82
PGSC0003DMT400016260	Potato	nucleus	33.72	34.78
Solyc04g011650.2.1	Tomato	nucleus	33.43	34.63
VIT_08s0007g00500.t01	Wine grape	nucleus	33.72	33.92
GSMUA_Achr10P...	Banana	cytosol, plastid	4.49	33.7
CDX86474	Canola	nucleus	26.92	33.39
Solyc12g027690.1.1	Tomato	extracellular	6.95	30.97
TraesCS6D01G378100.1	Wheat	nucleus	29.38	30.25
CDX80268	Canola	nucleus	29.23	24.4
Solyc12g027710.1.1	Tomato	cytosol	8.54	24.38
CDY33039	Canola	nucleus	29.09	24.3

Protein Annotations

EnsemblPlants:TraesCS4D01G208600.1	EnsemblPlantsGene:TraesCS4D01G208600	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR21717	PANTHER:PTHR21717:SF61	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	TIGR:cd11660	MapMan:15.5.2.2	:	:	:

Description

No Description!

Coordinates

chr4D:-:359416384..359419758

Molecular Weight (calculated)

75231.8 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.630

Length

691 amino acids

Sequence
(BLAST)

001: MVFQKRTSSE MESCGGSHVA EMPRVPKSAR GKRSVRKKES QGQAMCAFDL LATVAGKLLD EGEGSLGNMS AGSPVLAASA KDVCVKQEQC DEEGKHLKNY
101: VMDQDSCNES ALISHIASQR LADHHSRKGE DLNEVPKAKS EAVDKEPSMI SCTKADLGSN FGAIADRWSS ESVESGAFTG DAAANVMALA AAAFNKNAPD
201: MYNLLDPMDV DVKPPPLVSS DSTGEMPLYG GKIHKSVSFP RGPKGGAEYS VDRENDDDDD KSSGCTHSST ATNRGFRPNC TADQSRVKKF LACKYRKVAP
301: ARMHKGDLSY SDADRKPSFR NKKMYYTRQR TQRSTFKRRK MLDRHSTLVS EEFAKSNAKR TTKVNAREPH AASLEANKGS NSMPFHGSCK SNDCHVKLKI
401: KSFKVPELLI EIPETASVGS LKKTVLEAVN AMLGGGLRVG VLHHGKKIRD DSKTLMQAGI GHDDMLDNIG FSLEPNCTRH SSQLAAPEDI EFLETVETTE
501: PLARIAPADS SSKHGELDAS QELALTPLTA NYQGNDHDSV HSPGGISSPE KASANSRAIV PVTPVDSSAG AIVPANKAKR SAEQGQRRIR RPFSVAEVEA
601: LVLAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQDLL DRVLAAQSYW SQQQAKLQPK TPPLAEARLL T

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.