Factsheet for Os03t0274300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G096700.1	Wheat	nucleus	81.65	81.77
TraesCS4D01G208600.1	Wheat	nucleus	81.5	81.62
HORVU4Hr1G059800.2	Barley	nucleus	81.5	81.62
TraesCS4B01G207700.1	Wheat	nucleus	81.36	81.36
KXG39691	Sorghum	nucleus, plastid	76.01	74.5
Zm00001d028608_P006	Maize	nucleus	69.08	68.68
Zm00001d047808_P001	Maize	nucleus, plastid	70.23	65.06
GSMUA_Achr8P20810_001	Banana	nucleus	44.08	46.85
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	43.06	46.2
GSMUA_Achr7P15090_001	Banana	nucleus	44.51	44.44
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.65	43.4
VIT_06s0004g04940.t01	Wine grape	nucleus	43.64	43.39
AT3G46590.2	Thale cress	nucleus	32.95	41.23
CDY06712	Canola	nucleus	34.68	40.27
Bra015585.1-P	Field mustard	nucleus	34.68	40.13
CDY10282	Canola	nucleus	34.25	39.5
AT5G59430.2	Thale cress	nucleus	32.8	39.27
Solyc06g005590.2.1	Tomato	nucleus	39.02	39.19
PGSC0003DMT400005476	Potato	nucleus	39.02	39.02
CDY15617	Canola	nucleus	32.8	38.47
Solyc05g054410.2.1	Tomato	nucleus	38.01	38.17
KRH23087	Soybean	nucleus	39.6	38.16
Bra030689.1-P	Field mustard	nucleus	33.38	38.06
KRH10245	Soybean	nucleus	39.6	38.06
KRG99966	Soybean	nucleus	33.09	37.98
AT1G07540.1	Thale cress	nucleus	34.54	37.94
KRH29783	Soybean	nucleus	37.43	37.54
PGSC0003DMT400060234	Potato	nucleus	37.28	37.45
KRH49110	Soybean	nucleus	32.66	37.29
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	37.86	37.22
Solyc06g076270.2.1	Tomato	nucleus	37.28	36.86
Solyc04g011650.2.1	Tomato	nucleus	35.4	36.73
Bra002566.1-P	Field mustard	nucleus	30.2	36.73
PGSC0003DMT400016260	Potato	nucleus	35.55	36.72
PGSC0003DMT400077969	Potato	nucleus	36.71	36.55
KRG97906	Soybean	nucleus	35.55	36.5
KRH30983	Soybean	nucleus	35.55	36.23
KRH24782	Soybean	nucleus	32.23	35.51
CDX86474	Canola	nucleus	28.03	34.83
VIT_08s0007g00500.t01	Wine grape	nucleus	34.54	34.79
GSMUA_Achr10P...	Banana	cytosol, plastid	4.62	34.78
Solyc12g027690.1.1	Tomato	extracellular	7.51	33.55
Solyc12g027710.1.1	Tomato	cytosol	9.1	26.03
CDY33039	Canola	nucleus	30.35	25.39
CDX80268	Canola	nucleus	30.35	25.36
Os02t0817800-03	Rice	nucleus	14.45	15.8

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:4332403	ProteinID:ABF95241.1	ProteinID:BAS83495.1	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os03g0274300
EnsemblPlants:Os03t0274300-01	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF61	UniProt:Q10NC6
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI0000DB494E	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	RefSeq:XP_015631846.1	SEG:seg	:	:	:

Description

Similar to Initiator-binding protein. (Os03t0274300-01)

Coordinates

chr3:+:9247336..9252590

Molecular Weight (calculated)

75494.9 Da

IEP (calculated)

8.784

GRAVY (calculated)

-0.660

Length

692 amino acids

Sequence
(BLAST)

001: MVFQKRSSLE MESGGGSHVA EMPRVPKSAR GKRSIRKKES QGQVMCAFDL LATVAGKLLD EGEGSLGNAS SGTPAVDASP KDVRVKQEQC DEEAKHFKNE
101: VMDQDSCNES ALVSHIAFQR PVNHHGRKGE DPEGSHAVIE DPKAKSEALD KESSMISCTK AELGCNFAAI ADRWSPESVE SGAFTGDAAA IAMPATTSGF
201: HKNAPDMYNL LDPMDVDVKP PPLVSSDSTG EMPLYGNKIR RSTSFPRVPK GGAGFTVDRD EDDDDKSSGC THPSTATNRG FRPNCTAGHS RVKKLLACKH
301: RKVAPARMHK GDLSYSDVDR KPSFRNKKMY YTRQRTQRST FKRRKMFDRH SAQVSEEYAK ANTKFAARDS HAVSLEANKG TNSTAFQKSQ ESSDCHVKLR
401: IKSFKVPELL IEIPETATVG SLKKTVLEAV NAILGGGLRV GVLHHGKKVR DDNKTLMQAG ISHDEVLDNL GFSLEPNCAP HPSQLSPPED NEFMETVDTT
501: EPLARIAPAD SSSKHGEVDA SQELALAPLS ANYQGSDHDF VHSPGGMSSP DKASTNSRAI VPVTPADSNA GAIVPANKAK RSPEQGQRRI RRPFSVAEVE
601: ALVLAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQEL LDRVLAAQAY WSQQQAKLQP KTPPLAEALL LT

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.