Factsheet for VIT_06s0004g04940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005590.2.1	Tomato	nucleus	53.45	53.99
PGSC0003DMT400077969	Potato	nucleus	53.16	53.24
KRH29783	Soybean	nucleus	52.73	53.19
KRH23087	Soybean	nucleus	54.6	52.92
KRH24782	Soybean	nucleus	47.56	52.71
PGSC0003DMT400005476	Potato	nucleus	52.3	52.6
KRH10245	Soybean	nucleus	53.59	51.81
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	52.16	51.56
GSMUA_Achr8P20810_001	Banana	nucleus	46.98	50.23
Solyc06g076270.2.1	Tomato	nucleus	50.29	50.0
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	44.97	48.53
GSMUA_Achr7P15090_001	Banana	nucleus	47.7	47.91
VIT_08s0007g00500.t01	Wine grape	nucleus	45.98	46.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	45.98	44.94
KXG39691	Sorghum	nucleus, plastid	45.55	44.9
Os03t0274300-01	Rice	nucleus	43.39	43.64
HORVU4Hr1G059800.2	Barley	nucleus	41.81	42.11
TraesCS4B01G207700.1	Wheat	nucleus	41.81	42.05
TraesCS4A01G096700.1	Wheat	nucleus	41.67	41.97
TraesCS4D01G208600.1	Wheat	nucleus	41.67	41.97
Zm00001d028608_P006	Maize	nucleus	39.8	39.8
Zm00001d047808_P001	Maize	nucleus, plastid	42.1	39.22
TraesCS3D01G533700.1	Wheat	nucleus, plastid	35.92	38.46
TraesCS3B01G597500.1	Wheat	nucleus, plastid	35.92	38.4
HORVU3Hr1G115540.2	Barley	nucleus, plastid	36.21	38.3
TraesCS3A01G528500.1	Wheat	nucleus, plastid	35.78	38.25
EES10985	Sorghum	mitochondrion	35.63	38.15
GSMUA_Achr10P...	Banana	cytosol, plastid	4.74	35.87
TraesCS6A01G392300.1	Wheat	nucleus	28.59	29.66
TraesCS6B01G432500.1	Wheat	nucleus	28.16	29.21
TraesCS6D01G378100.1	Wheat	nucleus	28.02	29.06
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	31.18	23.93
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	25.86	23.17
Os02t0817800-03	Rice	nucleus	13.65	15.01

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100257090	wikigene:100257090	MapMan:15.5.2.2	ProteinID:CCB43562	ProteinID:CCB43562.1
UniProt:F6GV03	EMBL:FN594951	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003691	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	EntrezGene:LOC100257090
wikigene:LOC100257090	InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	TIGR:TC62656	UniParc:UPI000210978B
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	ArrayExpress:VIT_06s0004g04940	EnsemblPlantsGene:VIT_06s0004g04940	EnsemblPlants:VIT_06s0004g04940.t01	RefSeq:XP_002283389
RefSeq:XP_002283389.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5904833..5911379

Molecular Weight (calculated)

76715.0 Da

IEP (calculated)

9.465

GRAVY (calculated)

-0.610

Length

696 amino acids

Sequence
(BLAST)

001: MVLQKRLDYG FNGYQVPATP RATRSARRRG LFRKKVEDNQ MFAFDLLATV AGKLLLEGEK SPDSVNTSNG KEQCVIAEDQ VKNEGHAEDK PLKIEPCDQG
101: NSGGSFIVSE LSSQMPSQKY CLREFPRPQN DACSALASVI TSDCSEKVGC AEKLVIGNGK NETESFASKV EVGSSGFREF NDRKLENETK RQIKVEPIKT
201: GRAILNTGAG MFGSEDPVVW DGKPSVLVSS NSSAEVPPCR DNIPCGSFPL CRGDVKVVSR DDDDNSSGCT QPSTSTKSFR PLPRIGDRRI RKLLASKYWK
301: VTPKLKEDGL SNVDGEVKPI YRNKRNCYKR QRSQRNYPFK KRKLLYCSSV SNSEGGNGSQ RISDSPQMGI NSDASGSGLK LHGGISTSAS VAGQHTSFIS
401: RDSHVKLRIK SFRVPELFIE IPETATVGSL KRTVMEAVTA ILGGGLRVGV LLRGKKVRDD SKTLQQTGIS QDDQMDALGF TLEPNPSQAP QALCPGDNPF
501: LLPYDTPQPL KRYPPTPTVA HQGTSDASPD PPVTNLCDFV ESDHDSAPSP DTDMSIDKSV TDSKALVSVP AMSMEALAVV PVHRKSKRSE IVQRRIRRPF
601: SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSQQ QAKQQLKHQS ETCLLL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.