Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93437 | Soybean | nucleus | 95.68 | 61.55 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 64.41 | 41.95 |
| Solyc02g067570.2.1 | Tomato | nucleus | 57.98 | 38.8 |
| Solyc02g087360.2.1 | Tomato | nucleus | 57.54 | 38.64 |
| Bra006276.1-P | Field mustard | nucleus | 56.98 | 38.19 |
| CDX78604 | Canola | nucleus | 57.1 | 38.15 |
| CDX70587 | Canola | nucleus | 57.1 | 38.01 |
| KRG99216 | Soybean | nucleus | 57.65 | 37.65 |
| KRH45772 | Soybean | nucleus | 57.98 | 37.49 |
| AT5G15020.1 | Thale cress | nucleus | 56.76 | 37.45 |
| CDX91007 | Canola | nucleus | 54.32 | 37.04 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 56.1 | 36.88 |
| Bra023501.1-P | Field mustard | nucleus | 54.43 | 36.75 |
| CDX85568 | Canola | nucleus | 54.43 | 36.75 |
| PGSC0003DMT400003538 | Potato | nucleus | 55.21 | 36.7 |
| KRH69432 | Soybean | nucleus | 57.32 | 36.15 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 53.44 | 35.84 |
| CDY28683 | Canola | mitochondrion, nucleus | 52.77 | 35.36 |
| KRH74716 | Soybean | nucleus | 49.0 | 33.61 |
| KRH45776 | Soybean | nucleus | 19.96 | 19.52 |
| KRH45778 | Soybean | cytosol | 11.2 | 15.86 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 6.1 | 10.74 |
| Solyc02g087390.1.1 | Tomato | cytosol | 5.65 | 10.02 |
| Solyc02g087370.1.1 | Tomato | cytosol | 0.89 | 4.17 |
| KRG99215 | Soybean | cytosol | 0.22 | 1.46 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 0.11 | 0.46 |
| KRH18559 | Soybean | nucleus | 0.0 | 0.0 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02008095 | EnsemblPlants:KRH18561 | EnsemblPlantsGene:GLYMA_13G0678001 | InterPro:HDAC_interact_dom | InterPro:Sin3_C | ncoils:Coil |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | PFAM:PF08295 | PFAM:PF16879 | ProteinID:KRH18561 | ProteinID:KRH18561.1 |
| ProteinID:KRH18562.1 | SEG:seg | SMART:SM00761 | UniParc:UPI0006EDF5E3 | UniProt:A0A0R0GJE0 | MapMan:12.3.2.4.2 |
Description
hypothetical protein
Coordinates
chr13:+:16770648..16775985
Molecular Weight (calculated)
101750.0 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.763
Length
902 amino acids
Sequence
(BLAST)
(BLAST)
001: YPIPTASQRS ELGAQVLNDH WVSVTSGSED YSFKHMRRNQ YEESLFRCED DRYELDMLLE SVSSAAKKAE ELYNNINENK IGMETLNRIE DHFTVLNLRC
101: IERLYGDHGL DVIDILRKNP THALPVILTR LKQKQEEWSK CRSDFNKVWA EIYAKNHYKS LDHRSFYFKQ QDSKNLSTKS LVTEIKEIKE KQQKEDDIIQ
201: SIAAGNKQPL IPHLEFEYSD VGIHEDLYKL VCYSCEELFS SKELLNKIMR LWSTFLEPML GVPSQSHGTE RAEDRKTGHN VRNFGAPNIG GDGSPRGDSL
301: LMNSRVPKSD KNEADGRVTE VKNVHRTTVA SNDKENGSVG GELVSRDDPL MDKGQKNVEY NDKASGFSKQ FTSDEQGAKN NVSIAIRGEN SLNRTNLDVS
401: PGRALTPSRP TDVDDSVSKS QGVNAPSVEG CDMATPVPVA NGVLSESSKV KTHDESVGPC KIEKEEGELS PNGDSEEDNI VAYGDSNVQS MAKSKHNIER
501: RKYQSRNGED ESCPEAGGDN DADADDEDSE NVSEAGEDVS GSESAGDECF REDHEEEEDI EHDDVDGKAE SEGEAEGICD AQAGGDGTSL PLSERFLSSV
601: KPLTKHVSAV SFVEEMKDSR VFYGNDDFYV FFRLHQALYE RLLSAKTHSM SAEMKWKAKD ASSPDPYSRF INALYNLLDG SAENAKFEDE CRAIIGNQSY
701: VLFTLDKLIY KLVRQLQTVA TDEVDNKLLQ LYEYEKSRKP GKLNDSVYHA NAHVILHEEN IYRLQCSSTP SRLSIQLMDN MNEKPELFAV SIDPNFSFYL
801: HNDFLSVFPN KKEPHGIILH RNKRQYGKLD ELSAICSAME GVKVINGLEC KIACSSSKIS YVLDTQDFFF RPRKKRRTPS GTTTSRFRRD REERFRKLLA
901: CS
101: IERLYGDHGL DVIDILRKNP THALPVILTR LKQKQEEWSK CRSDFNKVWA EIYAKNHYKS LDHRSFYFKQ QDSKNLSTKS LVTEIKEIKE KQQKEDDIIQ
201: SIAAGNKQPL IPHLEFEYSD VGIHEDLYKL VCYSCEELFS SKELLNKIMR LWSTFLEPML GVPSQSHGTE RAEDRKTGHN VRNFGAPNIG GDGSPRGDSL
301: LMNSRVPKSD KNEADGRVTE VKNVHRTTVA SNDKENGSVG GELVSRDDPL MDKGQKNVEY NDKASGFSKQ FTSDEQGAKN NVSIAIRGEN SLNRTNLDVS
401: PGRALTPSRP TDVDDSVSKS QGVNAPSVEG CDMATPVPVA NGVLSESSKV KTHDESVGPC KIEKEEGELS PNGDSEEDNI VAYGDSNVQS MAKSKHNIER
501: RKYQSRNGED ESCPEAGGDN DADADDEDSE NVSEAGEDVS GSESAGDECF REDHEEEEDI EHDDVDGKAE SEGEAEGICD AQAGGDGTSL PLSERFLSSV
601: KPLTKHVSAV SFVEEMKDSR VFYGNDDFYV FFRLHQALYE RLLSAKTHSM SAEMKWKAKD ASSPDPYSRF INALYNLLDG SAENAKFEDE CRAIIGNQSY
701: VLFTLDKLIY KLVRQLQTVA TDEVDNKLLQ LYEYEKSRKP GKLNDSVYHA NAHVILHEEN IYRLQCSSTP SRLSIQLMDN MNEKPELFAV SIDPNFSFYL
801: HNDFLSVFPN KKEPHGIILH RNKRQYGKLD ELSAICSAME GVKVINGLEC KIACSSSKIS YVLDTQDFFF RPRKKRRTPS GTTTSRFRRD REERFRKLLA
901: CS
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.