Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | KRG93437 | AT3G01320.1 | 19962994 |
| AT5G47660.1 | KRH18559 | AT3G01320.1 | 19962994 |
| AT5G47660.1 | KRH18561 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11595 | Soybean | nucleus | 90.53 | 90.53 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 35.21 | 56.4 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 35.21 | 56.4 |
| PGSC0003DMT400034607 | Potato | nucleus | 42.6 | 37.02 |
| Solyc11g012720.1.1 | Tomato | nucleus | 44.08 | 36.88 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 16.86 | 28.93 |
| AT5G47660.1 | Thale cress | nucleus | 33.43 | 28.39 |
| CDY40550 | Canola | nucleus | 32.54 | 28.13 |
| Bra022149.1-P | Field mustard | nucleus | 31.95 | 27.91 |
| CDY28914 | Canola | nucleus | 31.66 | 27.65 |
| Bra024925.1-P | Field mustard | nucleus | 22.19 | 22.94 |
| CDY17716 | Canola | nucleus | 22.19 | 21.61 |
| KRH38181 | Soybean | nucleus | 28.7 | 19.8 |
| KRH64101 | Soybean | nucleus | 28.99 | 19.6 |
| KRH53849 | Soybean | nucleus | 28.11 | 19.11 |
| KRH70308 | Soybean | nucleus | 34.02 | 18.23 |
| KRH08699 | Soybean | nucleus | 34.62 | 17.86 |
| KRG91649 | Soybean | nucleus | 33.73 | 17.7 |
| KRH70307 | Soybean | nucleus | 30.77 | 17.36 |
| KRH35149 | Soybean | nucleus | 33.73 | 17.09 |
| KRH08698 | Soybean | nucleus | 31.07 | 17.05 |
| KRG91651 | Soybean | nucleus | 31.07 | 16.67 |
| CDX77787 | Canola | nucleus | 29.88 | 15.73 |
| KRG96954 | Soybean | nucleus | 25.74 | 14.5 |
| KRH34074 | Soybean | nucleus | 24.85 | 14.46 |
| KRH32666 | Soybean | nucleus | 24.26 | 13.8 |
| KRH68714 | Soybean | nucleus | 24.85 | 13.48 |
| KRH67857 | Soybean | nucleus | 23.08 | 13.4 |
| KRG96146 | Soybean | nucleus | 22.78 | 13.32 |
| KRG92655 | Soybean | nucleus | 25.15 | 12.67 |
| KRH34733 | Soybean | nucleus | 19.23 | 11.99 |
| KRG92051 | Soybean | nucleus | 18.34 | 11.55 |
| KRH35147 | Soybean | nucleus | 4.44 | 5.26 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100820302 | MapMan:15.5.20 | EMBL:ACUP02005382 | ncoils:Coil | EnsemblPlantsGene:GLYMA_09G014300 |
| UniProt:I1L039 | InterPro:IPR017877 | EnsemblPlants:KRH36613 | ProteinID:KRH36613 | ProteinID:KRH36613.1 | InterPro:Myb-like_dom |
| PFAM:PF13837 | PFscan:PS50090 | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | InterPro:SANT/Myb | SMART:SM00717 |
| UniParc:UPI0002337D2C | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:1071162..1073275
Molecular Weight (calculated)
38565.3 Da
IEP (calculated)
5.658
GRAVY (calculated)
-0.922
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFAGDHFP VPDHVAPFPD SGDLVFAADL LSHRPNPQKL RPIRSVPAAP IAHPPPPPLS HDPIPSGSGH APCHESSSSL DAEDEDDDDN SSASTEGHGP
101: IKKRRKTVRK LEDFLKDLMA KVMEKQEQMH EQLLEIIENK ERERIKREEA WKNEEMERIR KDEEARAQVN SRNLALISFI QNLLGHEIQI PQQPVEPCSK
201: REEDEVEVSA RKDLNNDPSD NNRWPDVEVQ ALITVRTSLE HKFRFMGSKG SIWEEISEAM NGMGYNRSSK KCKEKWENIN KYYKRTIGSG KKRRQNSKTC
301: PYFDELDILY RNGLLSIGNA LSNTSDVPQI EVKELTET
101: IKKRRKTVRK LEDFLKDLMA KVMEKQEQMH EQLLEIIENK ERERIKREEA WKNEEMERIR KDEEARAQVN SRNLALISFI QNLLGHEIQI PQQPVEPCSK
201: REEDEVEVSA RKDLNNDPSD NNRWPDVEVQ ALITVRTSLE HKFRFMGSKG SIWEEISEAM NGMGYNRSSK KCKEKWENIN KYYKRTIGSG KKRRQNSKTC
301: PYFDELDILY RNGLLSIGNA LSNTSDVPQI EVKELTET
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.