Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28914 | Canola | nucleus | 95.14 | 96.12 |
| CDY17716 | Canola | nucleus | 60.87 | 68.59 |
| AT5G47660.1 | Thale cress | nucleus | 69.57 | 68.34 |
| CDX77787 | Canola | nucleus | 73.66 | 44.86 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 20.46 | 37.91 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 19.95 | 36.97 |
| KRH36613 | Soybean | nucleus | 28.13 | 32.54 |
| KRH11595 | Soybean | nucleus | 28.13 | 32.54 |
| Solyc11g012720.1.1 | Tomato | nucleus | 28.13 | 27.23 |
| PGSC0003DMT400034607 | Potato | nucleus | 26.85 | 26.99 |
| CDY44964 | Canola | nucleus | 21.23 | 21.56 |
| CDY45957 | Canola | nucleus | 26.09 | 20.9 |
| CDY13568 | Canola | nucleus | 26.09 | 20.69 |
| CDY62151 | Canola | nucleus | 26.85 | 19.27 |
| CDX93785 | Canola | nucleus | 28.39 | 18.85 |
| CDY48546 | Canola | nucleus | 20.2 | 18.81 |
| CDY45955 | Canola | nucleus | 20.97 | 18.64 |
| CDY71745 | Canola | nucleus | 26.6 | 18.18 |
| CDX85980 | Canola | nucleus | 9.72 | 17.92 |
| CDY65284 | Canola | nucleus | 24.55 | 17.33 |
| CDX88320 | Canola | nucleus | 23.79 | 17.1 |
| CDX85981 | Canola | nucleus | 15.35 | 16.44 |
| CDX68080 | Canola | nucleus | 24.3 | 16.41 |
| CDY48545 | Canola | nucleus, plastid | 23.27 | 16.02 |
| CDY52502 | Canola | nucleus | 23.27 | 15.24 |
| CDY05590 | Canola | nucleus | 23.02 | 15.05 |
| CDX86194 | Canola | nucleus | 22.51 | 14.43 |
| CDY52482 | Canola | nucleus | 22.25 | 14.36 |
| CDX87564 | Canola | nucleus | 14.58 | 13.35 |
| CDX70293 | Canola | nucleus | 19.44 | 13.31 |
| CDY44379 | Canola | nucleus | 17.9 | 11.88 |
| CDX80883 | Canola | nucleus | 14.83 | 11.37 |
| CDY10364 | Canola | nucleus | 14.58 | 11.24 |
| CDY11266 | Canola | nucleus | 14.58 | 11.18 |
| CDY04893 | Canola | nucleus | 12.79 | 9.86 |
| CDY45956 | Canola | cytosol | 0.0 | 0.0 |
| CDX87563 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | GO:A0A078HPU2 | UniProt:A0A078HPU2 | EnsemblPlants:CDY40550 | ProteinID:CDY40550 |
| ProteinID:CDY40550.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00069872001 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | PFAM:PF13837 | PFscan:PS50090 |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE77EA |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g33420DBnaC02g33420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPU2]
Coordinates
chrLK032474:-:49751..51634
Molecular Weight (calculated)
44568.7 Da
IEP (calculated)
6.345
GRAVY (calculated)
-0.865
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQE NDDALATLAD LAPPPQKLRP IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDGCFDAP
101: LGSKIADVEE SGQSTRGVGK GLGFETEVQG PVSIHRTSRD GVSLSPSFDS DSEGDSSQGV GKAVTGKRKR QSREKLEHFM EKLVGKMMMR QEKLHNQLIN
201: VMEKMEWERV RSEEAWRQQE MERMKQNEEA RREEMSRSST LISFIKSVIG EEIKIPNAFV HAQPLQTIPR QCEWDQTQGD VKFVFPGGRR WPQEEVQALI
301: ASRSEVEEKT GVVHKGAIWD EISARMKGRG YERSAKKCKE KWENMNKYYK RVMESSKKQP EHTKTRSYFE LLESFYKTNS VTAEHSGEKE Q
101: LGSKIADVEE SGQSTRGVGK GLGFETEVQG PVSIHRTSRD GVSLSPSFDS DSEGDSSQGV GKAVTGKRKR QSREKLEHFM EKLVGKMMMR QEKLHNQLIN
201: VMEKMEWERV RSEEAWRQQE MERMKQNEEA RREEMSRSST LISFIKSVIG EEIKIPNAFV HAQPLQTIPR QCEWDQTQGD VKFVFPGGRR WPQEEVQALI
301: ASRSEVEEKT GVVHKGAIWD EISARMKGRG YERSAKKCKE KWENMNKYYK RVMESSKKQP EHTKTRSYFE LLESFYKTNS VTAEHSGEKE Q
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.