CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85980	Canola	nucleus	35.31	98.11
Bra040010.1-P	Field mustard	nucleus	100.0	94.69
CDY44964	Canola	nucleus	55.01	84.16
CDY71745	Canola	nucleus	80.48	82.87
CDY62151	Canola	nucleus	76.57	82.75
CDX85981	Canola	nucleus	49.92	80.55
AT1G33240.1	Thale cress	nucleus	87.78	77.28
HORVU6Hr1G025060.1	Barley	nucleus	10.53	48.82
CDY45955	Canola	nucleus	30.22	40.45
CDY45957	Canola	nucleus	32.94	39.75
CDY13568	Canola	nucleus	32.77	39.15
CDX88320	Canola	nucleus	35.99	38.97
CDY65284	Canola	nucleus	35.99	38.27
CDX68080	Canola	nucleus	37.18	37.82
CDY48545	Canola	nucleus, plastid	36.16	37.5
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	11.21	36.46
Os04t0541100-01	Rice	nucleus	37.35	36.36
TraesCS2D01G387100.1	Wheat	nucleus	45.84	36.24
CDY48546	Canola	nucleus	25.3	35.48
TraesCS2A01G389200.1	Wheat	nucleus	44.99	35.43
OQU82045	Sorghum	nucleus, plastid	44.82	35.34
HORVU2Hr1G092650.3	Barley	nucleus	44.48	35.31
TraesCS2B01G407400.1	Wheat	nucleus	45.33	35.13
HORVU6Hr1G061300.6	Barley	nucleus	37.52	34.91
Zm00001d017420_P001	Maize	nucleus	39.05	34.23
CDX87564	Canola	nucleus	24.62	33.96
Zm00001d002801_P001	Maize	nucleus	44.99	33.63
TraesCS6B01G284400.3	Wheat	nucleus, plastid	37.01	33.54
Zm00001d025960_P002	Maize	nucleus	39.9	33.19
TraesCS6A01G240200.1	Wheat	nucleus	37.52	33.13
TraesCS6D01G222500.1	Wheat	nucleus	37.69	33.08
Zm00001d051316_P002	Maize	nucleus	37.35	32.93
Os02t0648300-01	Rice	nucleus	24.45	32.65
EES05815	Sorghum	nucleus	38.54	31.53
CDY28914	Canola	nucleus	18.85	28.68
CDY40550	Canola	nucleus	18.85	28.39
CDY17716	Canola	nucleus	14.94	25.36
CDX70293	Canola	nucleus	23.09	23.82
CDY05590	Canola	nucleus	23.77	23.41
CDY52502	Canola	nucleus	23.43	23.12
CDY52482	Canola	nucleus	23.6	22.94
CDY44379	Canola	nucleus	22.92	22.92
CDY10364	Canola	nucleus	19.69	22.88
CDX80883	Canola	nucleus	19.69	22.75
CDX86194	Canola	nucleus	23.43	22.62
CDY11266	Canola	nucleus	19.52	22.55
CDY04893	Canola	nucleus	19.19	22.29
Os10t0516500-01	Rice	cytosol, nucleus	9.17	22.13
CDX77787	Canola	nucleus	22.07	20.25
CDX87563	Canola	nucleus	1.7	14.49
CDY45956	Canola	cytosol	1.7	14.08

Protein Annotations

EnsemblPlants:CDX93785	EnsemblPlantsGene:GSBRNA2T00156534001	Gene3D:1.10.10.60	GO:A0A078DWV5	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090
ProteinID:CDX93785	ProteinID:CDX93785.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EEA566	MapMan:15.5.20

Description

BnaA09g23850D

Coordinates

chrLK031877:+:791299..794385

Molecular Weight (calculated)

65831.0 Da

IEP (calculated)

5.876

GRAVY (calculated)

-0.961

Length

589 amino acids

Sequence
(BLAST)

001: MEQGAGGGNE VVEEASPISS RPPANMEELM RFSAAADDGG GLGGSSSSSS GNRWPREETL ALLRIRSEMD STFRDATLKA PLWEHVSRKL LELGYKRSAK
101: KCKEKFENVQ KYYKRTKETR GGRHDGKAYK FFSQLEALNT TPPSSSLDAT PLSTQPHTVS FTPNVPPPPP PMGPTFPGAT FSSHSSSTAS GMGSDDEDIM
201: DVDQAGPSSR KRKRGNRGGG KMMELFDGLV RQVMQKQAAM QRSFLEALEK REQERLHREE AWKRQEMSRL AREHEIMSQE RAASASRDAA IISLIQKITG
301: HTIQLPPSFS SQPSPPPPPA AKRPSSQPPQ LQPIMAIPQQ QVIMSSDQSS PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEISS SMKRMGYNRN
401: AKRCKEKWEN INKYYKKVKE SNKERPQDAK TCPYFHRLDL LYRNKVLGTG GSSSASALPH QDQISTVQKQ SPVSAVKPPQ GVVTVGSASS EEEEPREESP
501: QGTEKPEDLV MKELMQHQQQ DSMISEYEKI EESHNYNNME EEEEEEEEEE MDEELDEDEK SAAYEVAFQS PANRGGNGHT EPPFLTMVQ

Best Arabidopsis Sequence Match ( AT1G33240.1 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.