Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44964 | Canola | nucleus | 83.96 | 46.23 |
| CDX93785 | Canola | nucleus | 98.11 | 35.31 |
| CDY71745 | Canola | nucleus | 84.91 | 31.47 |
| CDY62151 | Canola | nucleus | 77.36 | 30.09 |
| AT1G33240.1 | Thale cress | nucleus | 85.38 | 27.06 |
| Os10t0516500-01 | Rice | cytosol, nucleus | 25.0 | 21.72 |
| Os02t0648300-01 | Rice | nucleus | 33.49 | 16.1 |
| Os04t0541100-01 | Rice | nucleus | 37.74 | 13.22 |
| CDY48546 | Canola | nucleus | 25.94 | 13.1 |
| CDX87563 | Canola | nucleus | 4.25 | 13.04 |
| CDY45956 | Canola | cytosol | 4.25 | 12.68 |
| CDX88320 | Canola | nucleus | 30.66 | 11.95 |
| CDY45957 | Canola | nucleus | 27.36 | 11.89 |
| CDY13568 | Canola | nucleus | 27.36 | 11.76 |
| CDY65284 | Canola | nucleus | 30.66 | 11.73 |
| CDY48545 | Canola | nucleus, plastid | 31.13 | 11.62 |
| CDX68080 | Canola | nucleus | 31.6 | 11.57 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 38.68 | 11.05 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 32.55 | 10.9 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 38.21 | 10.87 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 38.21 | 10.83 |
| OQU82045 | Sorghum | nucleus, plastid | 37.74 | 10.71 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 38.21 | 10.66 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 32.55 | 10.62 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 33.02 | 10.49 |
| Zm00001d025960_P002 | Maize | nucleus | 34.91 | 10.45 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 32.55 | 10.28 |
| Zm00001d017420_P001 | Maize | nucleus | 32.55 | 10.27 |
| Zm00001d002801_P001 | Maize | nucleus | 37.26 | 10.03 |
| Zm00001d051316_P002 | Maize | nucleus | 31.13 | 9.88 |
| CDY28914 | Canola | nucleus | 17.92 | 9.82 |
| CDY40550 | Canola | nucleus | 17.92 | 9.72 |
| EES05815 | Sorghum | nucleus | 32.08 | 9.44 |
| CDX77787 | Canola | nucleus | 24.06 | 7.94 |
| CDY45955 | Canola | nucleus | 15.09 | 7.27 |
| CDY52482 | Canola | nucleus | 20.75 | 7.26 |
| CDX86194 | Canola | nucleus | 20.28 | 7.05 |
| CDY05590 | Canola | nucleus | 19.81 | 7.02 |
| CDY52502 | Canola | nucleus | 19.34 | 6.87 |
| CDX70293 | Canola | nucleus | 15.09 | 5.6 |
| CDY44379 | Canola | nucleus | 13.68 | 4.92 |
| CDY17716 | Canola | nucleus | 7.55 | 4.61 |
| CDX80883 | Canola | nucleus | 9.43 | 3.92 |
| CDY11266 | Canola | nucleus | 9.43 | 3.92 |
| CDY10364 | Canola | nucleus | 8.02 | 3.35 |
| CDX87564 | Canola | nucleus | 6.6 | 3.28 |
| CDX85981 | Canola | nucleus | 4.72 | 2.74 |
| CDY04893 | Canola | nucleus | 6.13 | 2.56 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 0.94 | 1.57 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 0.47 | 0.55 |
Protein Annotations
| EnsemblPlants:CDX85980 | EnsemblPlantsGene:GSBRNA2T00143850001 | Gene3D:1.10.10.60 | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 |
| ProteinID:CDX85980 | ProteinID:CDX85980.1 | SEG:seg | UniParc:UPI0004EEC08D | MapMan:35.1 | : |
Description
BnaC06g21540D
Coordinates
chrLK031843:-:1318880..1320078
Molecular Weight (calculated)
24293.2 Da
IEP (calculated)
4.796
GRAVY (calculated)
-1.192
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRYQDNVP KGLLWEEISS SMKRMGYNRN AKRCKEKWEN INKYYKKVKE SNKERPQDAK TCPYFHRLDL LYRNKVLGSG GSSSASALPH QDQISTVQKQ
101: SPVSAVKPPQ GVVTVGSASS EGEEPREESP QETEKPEDLV MKELMQHQKQ DSMISEYEKI EESHNYNNME EEEMDEELDE DEKSAAYEVA FQSPANRGGN
201: GHTEPPFLTM VQ
101: SPVSAVKPPQ GVVTVGSASS EGEEPREESP QETEKPEDLV MKELMQHQKQ DSMISEYEKI EESHNYNNME EEEMDEELDE DEKSAAYEVA FQSPANRGGN
201: GHTEPPFLTM VQ
001: MSFWDVFDFE NPKTLFTSKK KKKKSDRTVT IKIFQLITTT KNKIKLENLN YFHVFGNRKL LELGYKRSSK KCKEKFENVQ KYYKRTKETR GGRHDGKAYK
101: FFSQLEALNT TPPSSSLDVT PLSVANPILM PSSSSSPFPV FSQPQPQTQT QPPQTHNVSF TPTPPPLPLP SMGPIFTGVT FSSHSSSTAS GMGSDDDDDD
201: MDVDQANIAG SSSRKRKRGN RGGGGKMMEL FEGLVRQVMQ KQAAMQRSFL EALEKREQER LDREEAWKRQ EMARLAREHE VMSQERAASA SRDAAIISLI
301: QKITGHTIQL PPSLSSQPPP PYQPPPAVTK RVAEPPLSTA QSQSQQPIMA IPQQQILPPP PPSHPHAHQP EQKQQQQPQQ EMVMSSEQSS LPSSSRWPKA
401: EILALINLRS GMEPRYQDNV PKGLLWEEIS TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGS GGGSSTSGLP
501: QDQKQSPVTA MKPPQEGLVN VQQTHGSAST EEEEPIEESP QGTEKPEDLV MRELIQQQQQ LQQQESMIGE YEKIEESHNY NNMEEEEDQE MDEEELDEDE
601: KSAAFEIAFQ SPANRGGNGH TEPPFLTMVQ
101: FFSQLEALNT TPPSSSLDVT PLSVANPILM PSSSSSPFPV FSQPQPQTQT QPPQTHNVSF TPTPPPLPLP SMGPIFTGVT FSSHSSSTAS GMGSDDDDDD
201: MDVDQANIAG SSSRKRKRGN RGGGGKMMEL FEGLVRQVMQ KQAAMQRSFL EALEKREQER LDREEAWKRQ EMARLAREHE VMSQERAASA SRDAAIISLI
301: QKITGHTIQL PPSLSSQPPP PYQPPPAVTK RVAEPPLSTA QSQSQQPIMA IPQQQILPPP PPSHPHAHQP EQKQQQQPQQ EMVMSSEQSS LPSSSRWPKA
401: EILALINLRS GMEPRYQDNV PKGLLWEEIS TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGS GGGSSTSGLP
501: QDQKQSPVTA MKPPQEGLVN VQQTHGSAST EEEEPIEESP QGTEKPEDLV MRELIQQQQQ LQQQESMIGE YEKIEESHNY NNMEEEEDQE MDEEELDEDE
601: KSAAFEIAFQ SPANRGGNGH TEPPFLTMVQ
Arabidopsis Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.