Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G387100.1 | Wheat | nucleus | 87.33 | 86.98 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 86.79 | 86.1 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 86.52 | 84.47 |
| Os04t0541100-01 | Rice | nucleus | 65.09 | 79.83 |
| OQU82045 | Sorghum | nucleus, plastid | 69.41 | 68.94 |
| Zm00001d025960_P002 | Maize | nucleus | 60.78 | 63.7 |
| Zm00001d002801_P001 | Maize | nucleus | 67.52 | 63.58 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.7 | 56.69 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 12.94 | 53.04 |
| CDY62151 | Canola | nucleus | 32.88 | 44.77 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 38.01 | 44.55 |
| CDX93785 | Canola | nucleus | 35.31 | 44.48 |
| CDY71745 | Canola | nucleus | 33.56 | 43.53 |
| Bra040010.1-P | Field mustard | nucleus | 36.12 | 43.09 |
| CDY44964 | Canola | nucleus | 22.1 | 42.6 |
| Bra036731.1-P | Field mustard | nucleus | 35.98 | 42.38 |
| CDX85981 | Canola | nucleus | 20.75 | 42.19 |
| AT1G33240.1 | Thale cress | nucleus | 37.06 | 41.11 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 44.74 | 40.1 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 42.18 | 39.47 |
| CDX85980 | Canola | nucleus | 11.05 | 38.68 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 21.43 | 22.49 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G092650.3 | EnsemblPlantsGene:HORVU2Hr1G092650 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | UniParc:UPI000B46F756 | UniProt:A0A287IYJ2 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chrchr2H:+:654598659..654602374
Molecular Weight (calculated)
77510.3 Da
IEP (calculated)
6.291
GRAVY (calculated)
-0.939
Length
742 amino acids
Sequence
(BLAST)
(BLAST)
001: TQQHQPQPQQ QPSYDELGGA GGSSFPEDDM LGDSGGNSGG GGVLGSGGNR WPREETLALI RIRSEMDTTF RDATLKGPLW EEVSRKLAEL GYKRSSKKCK
101: EKFENVHKYY KRTKEGRAGR QDGKSYRFFQ ELEALHAATA ASQQQQHQHQ EQLQLAGVAP PPQMHAFSSP QPMSAMPPPP GPIQPAPISS AAPAPAVEPP
201: QPPPVSLQGL SFPSMSDSES DDDDASEDDD MTAETGGSPD GVGKRKRGGS KKMMAFFEGL MKQVIQRQEE MQQRFLETME KREAERTARE EAWRRQEVAR
301: LNREQEQLAQ ERAAAASRDA SIIAFLQRIG GQTVHVPPVV IPMPTPMQAQ TPPPAKKPRQ QLPPPPPSQA THHPQPKPIP AAPLQQQPPA LQQQPPPQPP
401: QHKETTHDEA GTPRSAPAPT SAGLSLALVP VATEQHVGEA AGLGLGGGES GGGASSSRWP KTEVHALIQL RMDMDNRYQE NGPKGPLWEE ISAGMRRLGY
501: SRNSKRCKEK WENINKYFKK VKESNKRRPE DSKTCPYFHQ LEAIYRKKHN GGGGSGAAAN NAAVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVPAVA
601: EHQNLNRHEI EIEIEGKKIN DNDKRNNGGV GAAQVPTSNG QTTPTTATFD VDLGVKKPED TVRELNEQPQ RELTTDETDS DDMGDDYTDD GEDGEDDGKM
701: QYRIQFQRPN PVGANNAPPP ATTATTAAPT STPSSSFLAM VQ
101: EKFENVHKYY KRTKEGRAGR QDGKSYRFFQ ELEALHAATA ASQQQQHQHQ EQLQLAGVAP PPQMHAFSSP QPMSAMPPPP GPIQPAPISS AAPAPAVEPP
201: QPPPVSLQGL SFPSMSDSES DDDDASEDDD MTAETGGSPD GVGKRKRGGS KKMMAFFEGL MKQVIQRQEE MQQRFLETME KREAERTARE EAWRRQEVAR
301: LNREQEQLAQ ERAAAASRDA SIIAFLQRIG GQTVHVPPVV IPMPTPMQAQ TPPPAKKPRQ QLPPPPPSQA THHPQPKPIP AAPLQQQPPA LQQQPPPQPP
401: QHKETTHDEA GTPRSAPAPT SAGLSLALVP VATEQHVGEA AGLGLGGGES GGGASSSRWP KTEVHALIQL RMDMDNRYQE NGPKGPLWEE ISAGMRRLGY
501: SRNSKRCKEK WENINKYFKK VKESNKRRPE DSKTCPYFHQ LEAIYRKKHN GGGGSGAAAN NAAVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVPAVA
601: EHQNLNRHEI EIEIEGKKIN DNDKRNNGGV GAAQVPTSNG QTTPTTATFD VDLGVKKPED TVRELNEQPQ RELTTDETDS DDMGDDYTDD GEDGEDDGKM
701: QYRIQFQRPN PVGANNAPPP ATTATTAAPT STPSSSFLAM VQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.