Factsheet for HORVU6Hr1G025060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85981	Canola	nucleus	47.24	16.44
CDY62151	Canola	nucleus	47.24	11.01
CDX93785	Canola	nucleus	48.82	10.53
CDY71745	Canola	nucleus	46.46	10.31
Bra040010.1-P	Field mustard	nucleus	48.82	9.97
TraesCS2D01G387100.1	Wheat	nucleus	57.48	9.8
HORVU6Hr1G061300.6	Barley	nucleus	48.82	9.79
HORVU2Hr1G092650.3	Barley	nucleus	56.69	9.7
TraesCS2A01G389200.1	Wheat	nucleus	56.69	9.63
Bra036731.1-P	Field mustard	nucleus	47.24	9.52
AT1G33240.1	Thale cress	nucleus	49.61	9.42
TraesCS2B01G407400.1	Wheat	nucleus	55.91	9.34
Zm00001d025960_P002	Maize	nucleus	50.39	9.04
OQU82045	Sorghum	nucleus, plastid	51.97	8.84
Zm00001d002801_P001	Maize	nucleus	53.54	8.63
HORVU1Hr1G046940.4	Barley	nucleus	51.18	7.85
HORVU4Hr1G089120.1	Barley	nucleus, plastid	45.67	7.31
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	10.24	7.18
Os04t0541100-01	Rice	nucleus	32.28	6.78
HORVU0Hr1G014900.1	Barley	nucleus	22.05	3.96
CDY44964	Canola	nucleus	3.94	1.3
CDX85980	Canola	nucleus	1.57	0.94

Protein Annotations

EnsemblPlants:HORVU6Hr1G025060.1	EnsemblPlantsGene:HORVU6Hr1G025060	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF24	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI000B482682
UniProt:A0A287TM61	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:89392055..89392752

Molecular Weight (calculated)

14562.4 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.744

Length

127 amino acids

Sequence
(BLAST)

001: MLGDSGGNSG GVPRSGRNGW TWLETLDLIR IRSEMATTFC DATFKAPLWE EVSRKLAELG YERRSAKRCK EKLEQLRKSY KRAEESRAGR QDGQSYLFSQ
101: PLDALYAATA RAWQQRRQEQ LMLMILG

Best Arabidopsis Sequence Match ( AT1G33240.3 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.