Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82045 | Sorghum | nucleus, plastid | 80.66 | 65.33 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 79.83 | 65.09 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 79.5 | 64.56 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 79.01 | 63.9 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 79.34 | 63.16 |
| Zm00001d025960_P002 | Maize | nucleus | 71.24 | 60.88 |
| Zm00001d002801_P001 | Maize | nucleus | 78.18 | 60.03 |
| Os02t0648300-01 | Rice | nucleus | 34.88 | 47.85 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 14.21 | 47.51 |
| CDY44964 | Canola | nucleus | 26.78 | 42.08 |
| CDX85980 | Canola | nucleus | 13.22 | 37.74 |
| CDX93785 | Canola | nucleus | 36.36 | 37.35 |
| CDY62151 | Canola | nucleus | 33.55 | 37.25 |
| CDY71745 | Canola | nucleus | 35.21 | 37.24 |
| Bra040010.1-P | Field mustard | nucleus | 37.52 | 36.5 |
| Bra036731.1-P | Field mustard | nucleus | 37.19 | 35.71 |
| AT1G33240.1 | Thale cress | nucleus | 38.51 | 34.83 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 6.78 | 32.28 |
| Os10t0516500-01 | Rice | cytosol, nucleus | 12.73 | 31.56 |
| CDX85981 | Canola | nucleus | 18.84 | 31.23 |
| Os02t0104500-01 | Rice | nucleus | 23.14 | 29.17 |
Protein Annotations
| EnsemblPlants:Os04t0541100-01 | EnsemblPlantsGene:Os04g0541100 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb | ncoils:Coil | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:BAF15358.1 | ProteinID:BAS90294.1 | SEG:seg |
| SMART:SM00717 | UniParc:UPI0000DD91CF | UniProt:Q0JBC9 | MapMan:15.5.20 | : | : |
Description
a DNA binding protein. a transcriptional activator.Similar to Gt-2. (Os04t0541100-01)
Coordinates
chr4:-:27078042..27080294
Molecular Weight (calculated)
66247.5 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.969
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: KLAELGYKRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS YRFFTELEAL HAAAPQTPQP QQQQQQQLPP VTSSAPAMHA FAPPVPAPPP MSAMPPPPGP
101: IQPAPISSAA PAVPLELPPQ PPINLQGLSF SSMSGSESDD ESEDDEMTAE TGGSQDRLGK RKRGAGGKRL ATFFEGLIKQ VVDRQEEMQR RFLETMEKRE
201: AERTAREEAW RRQEVARLNR EQEQLAQERA AAASRDAAII SFLQRIGGQS VQVPPAATVI QMPTPVQLQT PPPVKQPARQ HQPQPTPPPP QAAPIPAAPL
301: QQQPPQPQHK ETIHHEAVTP RRAPPTSGSS LELVPAAEQH VESGLGGGEG GSASSSRWPK TEVQALIQLR MELDMRYQET GPKGPLWEEI SSGMRRLGYN
401: RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DVIYRRKHLT GGGGGGASAA NVAATAIEHQ NPNRHEIEGK NINDNDKRKN GGGGGAQVPT
501: SNGDTAPTTA TFDVDSGMKK PEDIVRELSE QPPREFTTDE TDSDDMGDDY TDDGEEGEDD GKMQYRIQFQ RPNPGGANTA PPPATTPASA VPTSTPTSTF
601: LAMVQ
101: IQPAPISSAA PAVPLELPPQ PPINLQGLSF SSMSGSESDD ESEDDEMTAE TGGSQDRLGK RKRGAGGKRL ATFFEGLIKQ VVDRQEEMQR RFLETMEKRE
201: AERTAREEAW RRQEVARLNR EQEQLAQERA AAASRDAAII SFLQRIGGQS VQVPPAATVI QMPTPVQLQT PPPVKQPARQ HQPQPTPPPP QAAPIPAAPL
301: QQQPPQPQHK ETIHHEAVTP RRAPPTSGSS LELVPAAEQH VESGLGGGEG GSASSSRWPK TEVQALIQLR MELDMRYQET GPKGPLWEEI SSGMRRLGYN
401: RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DVIYRRKHLT GGGGGGASAA NVAATAIEHQ NPNRHEIEGK NINDNDKRKN GGGGGAQVPT
501: SNGDTAPTTA TFDVDSGMKK PEDIVRELSE QPPREFTTDE TDSDDMGDDY TDDGEEGEDD GKMQYRIQFQ RPNPGGANTA PPPATTPASA VPTSTPTSTF
601: LAMVQ
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.