Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 86.57 | 84.31 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 88.31 | 83.81 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 88.78 | 83.76 |
| Os02t0648300-01 | Rice | nucleus | 38.39 | 55.1 |
| Zm00001d017420_P001 | Maize | nucleus | 57.19 | 53.87 |
| Zm00001d051316_P002 | Maize | nucleus | 55.13 | 52.25 |
| EES05815 | Sorghum | nucleus | 58.29 | 51.25 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.79 | 48.82 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 11.53 | 40.33 |
| CDY62151 | Canola | nucleus | 34.12 | 39.63 |
| CDY71745 | Canola | nucleus | 34.91 | 38.64 |
| CDX85981 | Canola | nucleus | 22.27 | 38.63 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 44.55 | 38.01 |
| CDX93785 | Canola | nucleus | 34.91 | 37.52 |
| Bra040010.1-P | Field mustard | nucleus | 35.23 | 35.85 |
| Bra036731.1-P | Field mustard | nucleus | 35.39 | 35.56 |
| CDY44964 | Canola | nucleus | 21.33 | 35.06 |
| AT1G33240.1 | Thale cress | nucleus | 35.7 | 33.78 |
| CDX85980 | Canola | nucleus | 10.9 | 32.55 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 42.02 | 32.13 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 39.81 | 31.78 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 23.85 | 21.36 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G061300.6 | EnsemblPlantsGene:HORVU6Hr1G061300 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF21 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | UniParc:UPI000B4813D8 | UniProt:A0A287UDK9 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:410649839..410653368
Molecular Weight (calculated)
68495.1 Da
IEP (calculated)
4.957
GRAVY (calculated)
-0.815
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHPEQGGAG YPYGPPLTGM APFLPQPASA TVSVSSIIPS PSPTQQAQPA GTNFEQLPAA GPGGGAGAVS FHEDDDMPVD GGSGRSALDA GAGGSGSRWP
101: REETVALIRI RSEMDAAFRN AALKAPVWEE VSRKLAELGY CRSAKKCKEK FENVDKYYRR TKEGRAGRQD GKNYRFFEEL EALHAAAPQH NHPMATATTI
201: LPDPRPLAMA PAYPAAGLPD LSLSSNSESE SDDGSDEGED QAGGGGRSNE SMMALFEGMI KQITEKQDAT QRLFLETLEK WEADRTAREE AWRRQELARI
301: SREREQHARE RAAAAARDAA LIAFLQRVGG NSVLPTPMPA PHPDAPAASL QLVVAASEEG GRRESGAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL
401: WEDISAGMRR IGYNRSSKRC KEKWENINKY FKKVKESNKR RPDDSKTCPY FHQLDAIYRK KQFAVANAGG GCSGTASGNT LAAVNAAASE KENHPWRELE
501: GKVSNDFGRR YRVGGGSSDA PPGDAEMAAA STVLDAVGTS KKSEDNMQSM EPNMQSQQKE LTATDETDSD DIETNYTDDG DDDDDGEDGN EDDKMKYTIE
601: FQKHKESGSS SAPAPATVVT SSAPTSSTFL AVQ
101: REETVALIRI RSEMDAAFRN AALKAPVWEE VSRKLAELGY CRSAKKCKEK FENVDKYYRR TKEGRAGRQD GKNYRFFEEL EALHAAAPQH NHPMATATTI
201: LPDPRPLAMA PAYPAAGLPD LSLSSNSESE SDDGSDEGED QAGGGGRSNE SMMALFEGMI KQITEKQDAT QRLFLETLEK WEADRTAREE AWRRQELARI
301: SREREQHARE RAAAAARDAA LIAFLQRVGG NSVLPTPMPA PHPDAPAASL QLVVAASEEG GRRESGAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL
401: WEDISAGMRR IGYNRSSKRC KEKWENINKY FKKVKESNKR RPDDSKTCPY FHQLDAIYRK KQFAVANAGG GCSGTASGNT LAAVNAAASE KENHPWRELE
501: GKVSNDFGRR YRVGGGSSDA PPGDAEMAAA STVLDAVGTS KKSEDNMQSM EPNMQSQQKE LTATDETDSD DIETNYTDDG DDDDDGEDGN EDDKMKYTIE
601: FQKHKESGSS SAPAPATVVT SSAPTSSTFL AVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.