Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G222500.1 | Wheat | nucleus | 95.2 | 94.63 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 86.96 | 89.23 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 83.81 | 88.31 |
| Os02t0648300-01 | Rice | nucleus | 36.88 | 55.78 |
| Zm00001d017420_P001 | Maize | nucleus | 53.52 | 53.12 |
| Zm00001d051316_P002 | Maize | nucleus | 52.17 | 52.1 |
| EES05815 | Sorghum | nucleus | 55.17 | 51.11 |
| CDY62151 | Canola | nucleus | 32.23 | 39.45 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 44.23 | 39.44 |
| CDX85981 | Canola | nucleus | 21.14 | 38.63 |
| CDY71745 | Canola | nucleus | 32.68 | 38.11 |
| CDX93785 | Canola | nucleus | 33.13 | 37.52 |
| Bra040010.1-P | Field mustard | nucleus | 33.43 | 35.85 |
| Bra036731.1-P | Field mustard | nucleus | 33.43 | 35.4 |
| CDY44964 | Canola | nucleus | 20.24 | 35.06 |
| AT1G33240.1 | Thale cress | nucleus | 33.88 | 33.78 |
| CDX85980 | Canola | nucleus | 10.49 | 33.02 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 38.68 | 32.87 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 40.18 | 32.8 |
| TraesCS6A01G013200.2 | Wheat | nucleus | 23.84 | 21.12 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G240200.1 | EnsemblPlantsGene:TraesCS6A01G240200 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | TIGR:cd12203 | MapMan:15.5.20 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:450464067..450467557
Molecular Weight (calculated)
71711.8 Da
IEP (calculated)
5.105
GRAVY (calculated)
-0.813
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHPEQGGAG YPYGPPLTGM APLLPQPASA AVPVSSIPSP TPSPMQPQPQ PAGTSFDQLP AARVSSIPSP TPSPSPMQPP PQPAGTNFDQ LPSAGAVSFH
101: DDENTPVDGG SGRSGGDAGA GGSGSRWPRE ETVALIRIRS EMDGAFRNAA LKAPVWEEVS RKLAELGYRR SAKKCKEKFE NVDKYYRRTK EGRAGRQDGK
201: NYRFFKELEA LHAAAPQQNQ HMATAAPILP DPRPLAMAPA YPGAGLPDLS LSSNSESESD DESDEEEDQA GGGGGRSNES MMALFEGMIK QITEKQDATQ
301: RLFLETLEKW EADRTAREEA WRRQELARIS REREQHARER AAAAARDAAV IAFLQRVGGS SVLPTPMPAH TAPHPDAPAS SLQLVVAAPE EGGRRGGGES
401: SAGMSRWPKE EVHALIQLRM EKDEHCQDMG AKGPLWEDIS AGMRRIGYNR SSKRCKEKWE NINKYFKKVK ESNKRRPEDS KTCPYFHQLD AIYRKKQSAV
501: SNAAGGCSST ASGNAVAAVN ASASEQHNPW RELEGKISND FDRRHTVGGG SSDAPPGDGE VAAASTVLDA IATTKKSEDN VMAMESNIQS QQTEVTATDE
601: TDSDDIEGNY TDDGDDDDGD EDDKMKYTIE FQKHKEGGSS SAPAAPATAA TVVTSSAPTG RTFLAVQ
101: DDENTPVDGG SGRSGGDAGA GGSGSRWPRE ETVALIRIRS EMDGAFRNAA LKAPVWEEVS RKLAELGYRR SAKKCKEKFE NVDKYYRRTK EGRAGRQDGK
201: NYRFFKELEA LHAAAPQQNQ HMATAAPILP DPRPLAMAPA YPGAGLPDLS LSSNSESESD DESDEEEDQA GGGGGRSNES MMALFEGMIK QITEKQDATQ
301: RLFLETLEKW EADRTAREEA WRRQELARIS REREQHARER AAAAARDAAV IAFLQRVGGS SVLPTPMPAH TAPHPDAPAS SLQLVVAAPE EGGRRGGGES
401: SAGMSRWPKE EVHALIQLRM EKDEHCQDMG AKGPLWEDIS AGMRRIGYNR SSKRCKEKWE NINKYFKKVK ESNKRRPEDS KTCPYFHQLD AIYRKKQSAV
501: SNAAGGCSST ASGNAVAAVN ASASEQHNPW RELEGKISND FDRRHTVGGG SSDAPPGDGE VAAASTVLDA IATTKKSEDN VMAMESNIQS QQTEVTATDE
601: TDSDDIEGNY TDDGDDDDGD EDDKMKYTIE FQKHKEGGSS SAPAAPATAA TVVTSSAPTG RTFLAVQ
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.