Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G016300.1 | Wheat | nucleus | 95.35 | 94.85 |
| TraesCS6B01G020100.1 | Wheat | nucleus | 94.56 | 93.56 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 84.33 | 89.82 |
| Zm00001d014938_P001 | Maize | nucleus | 65.34 | 74.1 |
| EES06104 | Sorghum | nucleus | 72.11 | 73.38 |
| Zm00001d054080_P001 | Maize | nucleus | 69.46 | 73.25 |
| Os02t0104500-01 | Rice | nucleus | 46.08 | 72.29 |
| GSMUA_Achr7P04610_001 | Banana | nucleus | 31.21 | 48.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.88 | 47.97 |
| GSMUA_Achr1P24120_001 | Banana | nucleus | 39.31 | 44.25 |
| VIT_04s0008g01850.t01 | Wine grape | nucleus | 32.54 | 37.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.3 | 32.71 |
| PGSC0003DMT400080676 | Potato | nucleus | 15.8 | 25.54 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 21.12 | 23.84 |
| KRH34074 | Soybean | nucleus | 17.53 | 22.72 |
| KRG96954 | Soybean | nucleus | 17.4 | 21.83 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 21.51 | 21.66 |
| CDY52502 | Canola | nucleus | 16.87 | 21.27 |
| CDY52482 | Canola | nucleus | 17.0 | 21.12 |
| KRH68714 | Soybean | nucleus | 17.4 | 21.03 |
| CDX86194 | Canola | nucleus | 17.0 | 20.98 |
| Bra009994.1-P | Field mustard | nucleus | 17.0 | 20.98 |
| CDY05590 | Canola | nucleus | 16.6 | 20.9 |
| Bra020607.1-P | Field mustard | nucleus | 16.73 | 20.72 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 21.51 | 20.64 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 22.31 | 20.56 |
| AT5G28300.1 | Thale cress | nucleus | 16.87 | 20.52 |
| Solyc08g061910.2.1 | Tomato | nucleus | 6.51 | 19.6 |
| KRG92655 | Soybean | nucleus | 17.26 | 19.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.13 | 18.48 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G013200.2 | EnsemblPlantsGene:TraesCS6A01G013200 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF31 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| TIGR:cd12203 | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:6190121..6192990
Molecular Weight (calculated)
79610.2 Da
IEP (calculated)
6.449
GRAVY (calculated)
-0.828
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSGYGGVSE FQQFIMDGGF AMAAAPQQQA QAAAAAAAAA GGQELGAPFR YQPLHHHAMQ HHPQQQQQQH PAQMPPHFAH FGVAPAAAAA GGIPFTQQFL
101: NHQAAAAGHH HQQHHHLQLF HHEQQQQQQQ QQHHKPQPPP ARWAPQQQHH QHPHQQQQHH HHQLGLDVEA AAVPESSRAT SGGAAPPGVP PFLAAAMNFK
201: LAVDPGGGSG ATDDALNDGT GGGGGAGSGM MLHGGGGGDD EAATESRLRR WTGEEETSIK EPTWRPLDID YIHSTSSSSK RAGAGKEKVA TPESPAPVAP
301: AANYFKKAGG GDDNAGAAAS AGGGGGNYKL FSELEAIYKP GSGGGAGQTG SGSGLTGDDN AILPPPSMAD LPGGALAAAV DAPQANTSET SAGEDAPAVL
401: QPQPPPPPQA SVGEARRKRK RRRQEQQQQL TASASFFEQL VQRLIEHQEG LHRQFLDAME RRERERAARD EAWRRQEADK FAREAAARAQ DRASAAARET
501: AIIAYLEKLS GETITLPQQP AANPAAPTSA DDATSHDAGR ELVPYECGEL SLPLMSSSSR WPKHEVEALI RVRSGLDNRF QEPGLKGPLW EEVSARMAAA
601: GYGGRSAKRC KEKWENINKY FRKAKESGKK RPAHAKTCPY FDELDRLYSR SGHGSGASSG AGNTSAKATA NAIATADDAA NKASSELLDA VVKYPTDTHY
701: GPPPGFPNDG KEDGAAQHDG EGDVDMGRAS GRAGEDHDDE AGQSHGHDDD DDH
101: NHQAAAAGHH HQQHHHLQLF HHEQQQQQQQ QQHHKPQPPP ARWAPQQQHH QHPHQQQQHH HHQLGLDVEA AAVPESSRAT SGGAAPPGVP PFLAAAMNFK
201: LAVDPGGGSG ATDDALNDGT GGGGGAGSGM MLHGGGGGDD EAATESRLRR WTGEEETSIK EPTWRPLDID YIHSTSSSSK RAGAGKEKVA TPESPAPVAP
301: AANYFKKAGG GDDNAGAAAS AGGGGGNYKL FSELEAIYKP GSGGGAGQTG SGSGLTGDDN AILPPPSMAD LPGGALAAAV DAPQANTSET SAGEDAPAVL
401: QPQPPPPPQA SVGEARRKRK RRRQEQQQQL TASASFFEQL VQRLIEHQEG LHRQFLDAME RRERERAARD EAWRRQEADK FAREAAARAQ DRASAAARET
501: AIIAYLEKLS GETITLPQQP AANPAAPTSA DDATSHDAGR ELVPYECGEL SLPLMSSSSR WPKHEVEALI RVRSGLDNRF QEPGLKGPLW EEVSARMAAA
601: GYGGRSAKRC KEKWENINKY FRKAKESGKK RPAHAKTCPY FDELDRLYSR SGHGSGASSG AGNTSAKATA NAIATADDAA NKASSELLDA VVKYPTDTHY
701: GPPPGFPNDG KEDGAAQHDG EGDVDMGRAS GRAGEDHDDE AGQSHGHDDD DDH
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.