Factsheet for Bra009994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86194	Canola	nucleus	99.84	99.84
Bra020607.1-P	Field mustard	nucleus	79.34	79.61
AT5G28300.1	Thale cress	nucleus	80.16	79.0
KRH34074	Soybean	nucleus	38.85	40.79
VIT_14s0030g01860.t01	Wine grape	plastid	39.84	39.51
KRG96954	Soybean	nucleus	36.72	37.33
KRH68714	Soybean	nucleus	37.38	36.6
KRG92655	Soybean	nucleus	39.34	35.77
Bra003702.1-P	Field mustard	nucleus	19.51	25.98
Bra008286.1-P	Field mustard	nucleus	20.49	24.18
Bra015716.1-P	Field mustard	nucleus	21.8	24.14
Bra008285.1-P	Field mustard	nucleus	21.31	23.42
Bra015715.1-P	Field mustard	nucleus	21.8	23.17
Bra040010.1-P	Field mustard	nucleus	23.11	22.67
Bra022149.1-P	Field mustard	nucleus	14.1	22.22
Bra036731.1-P	Field mustard	nucleus	22.95	22.22
Bra024925.1-P	Field mustard	nucleus	11.64	21.71
GSMUA_Achr7P04610_001	Banana	nucleus	17.21	21.69
Os02t0104500-01	Rice	nucleus	17.05	21.67
Bra003703.1-P	Field mustard	nucleus	21.48	21.37
PGSC0003DMT400080676	Potato	nucleus	16.23	21.24
GSMUA_AchrUn_...	Banana	nucleus	7.38	21.03
Zm00001d014938_P001	Maize	nucleus	20.66	18.98
GSMUA_Achr1P24120_001	Banana	nucleus	20.66	18.83
Bra005777.1-P	Field mustard	nucleus	16.72	17.8
Bra009518.1-P	Field mustard	nucleus	16.56	17.69
Bra028824.1-P	Field mustard	nucleus	16.89	17.46
EES06104	Sorghum	nucleus	21.15	17.43
Zm00001d054080_P001	Maize	nucleus	20.16	17.23
HORVU0Hr1G014900.1	Barley	nucleus	19.84	17.11
TraesCS6B01G020100.1	Wheat	nucleus	21.31	17.08
TraesCS6A01G013200.2	Wheat	nucleus	20.98	17.0
TraesCS6D01G016300.1	Wheat	nucleus	20.98	16.91
Solyc08g061910.2.1	Tomato	nucleus	6.39	15.6
GSMUA_AchrUn_...	Banana	nucleus	10.66	13.86
GSMUA_AchrUn_...	Banana	nucleus	14.75	12.89

Protein Annotations

EnsemblPlants:Bra009994.1	EnsemblPlants:Bra009994.1-P	EnsemblPlantsGene:Bra009994	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	SEG:seg
UniParc:UPI000253EE56	UniProt:M4D0J6	MapMan:15.5.20	:	:	:

Description

AT5G28300 (E=4e-223) | trihelix DNA-binding protein, putative

Coordinates

chrA06:-:18509442..18511746

Molecular Weight (calculated)

69844.2 Da

IEP (calculated)

7.468

GRAVY (calculated)

-1.117

Length

610 amino acids

Sequence
(BLAST)

001: MFDGGVPEQI HRFIASPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAH MLNLDGPKIT HHHHHHHHHH HDIKDSSATS EWMGHTDHDG DNHRHHHHHP
101: WCSDEVLALL RFRSTVENWF PEFTWEHTSR KLAEGGFKRS PQECKEKFEE EERRYFNSNN NTNAHHMSNY NKGNYRLFSE VDEFYHHGHA GGEHVVSSEV
201: GDNQNKTNSS LEGKGNVEET GQDLLEDKTD HQDQGQVDES SMRDKMNSID TVGKVGNVED DAKSSSSASL MMIMRDNKKR KRKKKKERFG VLKGFCEGLV
301: SNVIAQQEEM HKKLLEDMVK KEEEKIAREE VWKKQEMERL NKELEIRAQE QAMASDRNTS IIKFISKFTD HYNHDDGNNK VQSPNPSQDS FSLVLSKPQG
401: SRKCQTSSSL QTLTPQNPSL EPTSPKTLKI KTKNPKAPKG DEQGDIGKRW PRDEVLALIN IRRSISSMND DDHRKDDIRL SSPSSSTKAV PLWERISKKM
501: LEVGYKRSAK RCKEKWENIN KYFRKTKDVN KKRPLDSRTC PYFHQLTALY SQPSTGTTTT VTADTSVEEL ETRPKENRVG SGDSDIPTAM HVDGASEKSN
601: EQFSGFDLAF

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.