CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68714	Soybean	nucleus	90.67	87.32
KRH34074	Soybean	nucleus	57.83	59.72
KRG92655	Soybean	nucleus	58.33	52.16
VIT_14s0030g01860.t01	Wine grape	plastid	50.0	48.78
CDY05590	Canola	nucleus	37.67	37.79
Bra020607.1-P	Field mustard	nucleus	37.67	37.17
CDY52502	Canola	nucleus	36.83	37.02
CDX86194	Canola	nucleus	37.5	36.89
Bra009994.1-P	Field mustard	nucleus	37.33	36.72
CDY52482	Canola	nucleus	37.0	36.63
AT5G28300.1	Thale cress	nucleus	37.33	36.19
KRH35148	Soybean	cytosol, mitochondrion, nucleus	9.83	29.95
KRH53849	Soybean	nucleus	22.33	26.96
KRH38181	Soybean	nucleus	21.83	26.73
KRH64101	Soybean	nucleus	21.83	26.2
KRH11595	Soybean	nucleus	14.5	25.74
KRH36613	Soybean	nucleus	14.5	25.74
KRH70308	Soybean	nucleus	24.67	23.45
Os02t0104500-01	Rice	nucleus	18.33	22.92
KRH08699	Soybean	nucleus	25.0	22.9
KRG91649	Soybean	nucleus	24.17	22.52
GSMUA_Achr7P04610_001	Banana	nucleus	17.33	21.49
KRH35149	Soybean	nucleus	23.5	21.14
KRH70307	Soybean	nucleus	20.5	20.53
KRH08698	Soybean	nucleus	20.83	20.29
KRG91651	Soybean	nucleus	21.17	20.16
PGSC0003DMT400080676	Potato	nucleus	15.5	19.96
GSMUA_AchrUn_...	Banana	nucleus	7.0	19.63
KRH32666	Soybean	nucleus	19.33	19.53
Zm00001d014938_P001	Maize	nucleus	21.5	19.43
KRH67857	Soybean	nucleus	18.83	19.42
KRG96146	Soybean	nucleus	18.67	19.38
GSMUA_Achr1P24120_001	Banana	nucleus	20.67	18.54
Zm00001d054080_P001	Maize	nucleus	21.33	17.93
EES06104	Sorghum	nucleus	22.0	17.84
HORVU0Hr1G014900.1	Barley	nucleus	20.83	17.68
KRH34733	Soybean	nucleus	15.83	17.53
KRG92051	Soybean	nucleus	15.67	17.5
TraesCS6A01G013200.2	Wheat	nucleus	21.83	17.4
TraesCS6D01G016300.1	Wheat	nucleus	21.83	17.31
TraesCS6B01G020100.1	Wheat	nucleus	21.67	17.08
GSMUA_AchrUn_...	Banana	nucleus	12.17	15.56
KRH35147	Soybean	nucleus	6.67	14.04
Solyc08g061910.2.1	Tomato	nucleus	5.83	14.0
GSMUA_AchrUn_...	Banana	nucleus	15.33	13.18

Protein Annotations

EMBL:ACUP02012169	EnsemblPlants:KRG96954	EnsemblPlantsGene:GLYMA_19G243500	EntrezGene:100801868	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	ProteinID:KRG96954
ProteinID:KRG96954.1	ProteinID:KRG96955.1	SEG:seg	UniParc:UPI00023DDE61	UniProt:I1NC80	MapMan:15.5.20

Description

hypothetical protein

Coordinates

chr19:+:49099907..49103509

Molecular Weight (calculated)

68152.2 Da

IEP (calculated)

6.869

GRAVY (calculated)

-0.969

Length

600 amino acids

Sequence
(BLAST)

001: MFDGAPDQFH QFIAPRTTLP LHLSFPLHHH ASSTPPPNTF LPFDPYNPSS HHLLPSLQTN HLLHPPTTSP THKHEQDKVI APIVNNNEEI QRDQRQLPDQ
101: LTDSWTNDEV LALFRIRSSM ENWLPELTWD HVSRRLAEVG FKKSAEKCKE KFEDESRYFD NINNYGKNNF RFLISELEEL CQNSDPGAHD HNGVVVRSEK
201: THHLGGHALE ENSRDIETTT ATKRCDIGSD TVVEKSNSKV RKRKRRDRFE MFKGFCESVV NKMMAQQEET HNKLLEDMVK RDQEKFAREE AWKKQELDRM
301: KKELEIMAQE QAIAGDRQAT IIEFLKKCAT TTITSLSPPS QNAKYYITND SNLPNCASHS QNPNNPSNED NNLEPTPSSK MIQNHGQTTL GAENPSTSDT
401: LLQVPSSSNS SPTTHNPSSS LNSHNNIIPL ESNSVSTYKP TSTTPMASSE NSKDDIGRRW PRDEVLALIN LRCTSLSSNE EKEGNKGPLW ERISQGMSAL
501: GYKRSAKRCK EKWENINKYF RKTKDNVNKK RSLNSRTCPY FHQLSCLYGQ GKIVPQSERE GNYCLNPTPN SGQVPPDDDH QVQDDESSQV GSAGLVQYAC

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.