CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08699	Soybean	nucleus	89.38	86.11
KRG91649	Soybean	nucleus	62.28	61.02
KRH35149	Soybean	nucleus	62.6	59.22
KRH35148	Soybean	cytosol, mitochondrion, nucleus	17.75	56.85
CDX88320	Canola	nucleus	48.81	56.62
Bra015716.1-P	Field mustard	nucleus	49.13	56.26
CDY45955	Canola	nucleus	39.14	56.14
Bra008285.1-P	Field mustard	nucleus	47.39	53.87
CDY65284	Canola	nucleus	46.59	53.07
AT1G76880.1	Thale cress	nucleus	50.4	52.74
CDX68080	Canola	nucleus	48.34	52.68
CDY48545	Canola	nucleus, plastid	47.23	52.46
Bra003703.1-P	Field mustard	nucleus	49.29	50.73
KRH70307	Soybean	nucleus	46.28	48.75
CDX87564	Canola	nucleus	32.96	48.71
KRH08698	Soybean	nucleus	46.59	47.73
KRG91651	Soybean	nucleus	46.91	46.98
KRH35147	Soybean	nucleus	20.92	46.32
KRH38181	Soybean	nucleus	34.23	44.08
KRH53849	Soybean	nucleus	34.55	43.86
KRH64101	Soybean	nucleus	34.23	43.2
KRH36613	Soybean	nucleus	18.23	34.02
KRH11595	Soybean	nucleus	18.07	33.73
Zm00001d032453_P001	Maize	nucleus	40.57	32.65
Zm00001d013849_P001	Maize	nucleus	39.62	32.17
EER91374	Sorghum	nucleus	40.41	31.6
TraesCS1B01G203300.2	Wheat	nucleus	40.25	31.2
TraesCS1D01G162400.1	Wheat	nucleus, plastid	40.25	31.09
TraesCS1A01G176700.2	Wheat	nucleus	40.25	31.09
HORVU1Hr1G046940.4	Barley	nucleus	40.73	31.04
CDY45956	Canola	cytosol	3.49	30.99
TraesCS5A01G558200.1	Wheat	nucleus, plastid	38.19	30.7
TraesCSU01G029700.1	Wheat	nucleus	38.03	30.5
GSMUA_Achr8P11770_001	Banana	nucleus	8.24	30.41
TraesCS4B01G396900.1	Wheat	nucleus	33.28	30.35
KXG40355	Sorghum	nucleus, plastid	37.56	30.35
HORVU4Hr1G089120.1	Barley	nucleus, plastid	36.93	29.38
Zm00001d027335_P001	Maize	nucleus	37.56	29.3
KRG96146	Soybean	nucleus	24.09	26.3
KRH67857	Soybean	nucleus	23.93	25.95
KRH34074	Soybean	nucleus	23.3	25.3
KRH32666	Soybean	nucleus	23.61	25.08
KRH34733	Soybean	nucleus	21.39	24.91
KRG92051	Soybean	nucleus	21.08	24.77
KRG96954	Soybean	nucleus	23.45	24.67
KRH68714	Soybean	nucleus	23.93	24.24
KRG92655	Soybean	nucleus	23.77	22.35

Protein Annotations

EMBL:ACUP02000762	EnsemblPlants:KRH70308	EnsemblPlantsGene:GLYMA_02G082100	EntrezGene:547624	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090
ProteinID:KRH70308	ProteinID:KRH70308.1	ProteinID:KRH70309.1	SEG:seg	SMART:SM00717	UniParc:UPI0002337226
UniProt:K7K730	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7113984..7118481

Molecular Weight (calculated)

69996.8 Da

IEP (calculated)

5.828

GRAVY (calculated)

-0.922

Length

631 amino acids

Sequence
(BLAST)

001: MLGDSAVLGT GGGGSGDAVA APPVVGGGAA ASGGAHEGGA NGGGGSNSGD DRVEEGDKSF GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWEEVSRK
101: LAELGYHRNA KKCKEKFENV YKYHKRTKEG RSGKSEGKTY RFFDQLQALE NNPSIHAMQS PTPTPSKPPQ TTALLATPVS IVVTTTTTPS TLVSNNATVP
201: STNTPPLPQA ILNITPPSTL NITTPSFPSS NPTTYFPTQT PNPTTNNNPP NTITPASFPN FSADLLSNSS FSSTSSEETT TMGGGGMRRK RKRKWKDFFE
301: RLMKEVIEKQ EGLQRRFLEA IEKREQERVV REEAWRMQEM QRINREREIL AQERSIAAAK DAAVMTFLQK IAEHQQQEIN LEPALNNNNN SITVVPQQPV
401: PQTTTTPTPT PQQAQTTIVP EAPQPQQQIV VSNVENNKAD NNGENLTMGA SSSRWPKMEV QALINLRTSL ETKYQENGPK GPLWEEISAL MRKMGYNRNA
501: KRCKEKWENI NKYFKKVKES SKKRPEDSKT CPYFHQLEAL YREKNKREGQ MKPDSMMAPL MVQPEQQWPP QTHVVPPEVT MGDAQNDPMD RRHEEVEEDE
601: ADKEIGDEDE DEDDEGSDNY EIVASKPASG E

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.