Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G350500.1 | nucleus |
| TraesCS1B01G364800.1 | nucleus |
| TraesCS1D01G353300.1 | nucleus |
| TraesCS3A01G282800.1 | nucleus |
| TraesCS3B01G316500.1 | nucleus |
| TraesCS3D01G282800.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G029700.1 | Wheat | nucleus | 92.34 | 81.19 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 91.04 | 80.25 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 86.99 | 75.91 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 38.87 | 48.29 |
| KXG40355 | Sorghum | nucleus, plastid | 52.6 | 46.61 |
| Zm00001d027335_P001 | Maize | nucleus | 53.47 | 45.74 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 12.43 | 43.65 |
| GSMUA_Achr11P... | Banana | nucleus | 37.86 | 41.0 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 47.25 | 40.17 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 38.01 | 39.31 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 35.98 | 38.85 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 31.79 | 38.13 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 35.69 | 37.42 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 40.75 | 37.11 |
| CDX88320 | Canola | nucleus | 28.9 | 36.76 |
| Bra015716.1-P | Field mustard | nucleus | 29.19 | 36.66 |
| Bra008285.1-P | Field mustard | nucleus | 28.32 | 35.32 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 32.51 | 35.16 |
| CDY45955 | Canola | nucleus | 22.25 | 35.0 |
| CDX68080 | Canola | nucleus | 29.19 | 34.89 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 25.58 | 34.71 |
| CDY13568 | Canola | nucleus | 24.71 | 34.69 |
| CDY48545 | Canola | nucleus, plastid | 28.47 | 34.68 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 32.51 | 34.62 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 34.68 | 34.33 |
| CDY65284 | Canola | nucleus | 27.46 | 34.3 |
| CDY45957 | Canola | nucleus | 24.13 | 34.22 |
| Solyc11g005380.1.1 | Tomato | nucleus | 24.42 | 34.14 |
| KRG91649 | Soybean | nucleus | 31.21 | 33.54 |
| AT1G76880.1 | Thale cress | nucleus | 29.19 | 33.5 |
| PGSC0003DMT400010112 | Potato | nucleus | 24.28 | 33.4 |
| KRH70308 | Soybean | nucleus | 30.35 | 33.28 |
| Bra003702.1-P | Field mustard | nucleus | 21.97 | 33.19 |
| Bra003703.1-P | Field mustard | nucleus | 29.34 | 33.12 |
| CDY48546 | Canola | nucleus | 20.09 | 33.1 |
| KRH38181 | Soybean | nucleus | 23.41 | 33.06 |
| KRH53849 | Soybean | nucleus | 23.7 | 33.0 |
| KRH64101 | Soybean | nucleus | 23.55 | 32.6 |
| KRH35149 | Soybean | nucleus | 31.36 | 32.53 |
| KRH08699 | Soybean | nucleus | 30.78 | 32.52 |
| Bra008286.1-P | Field mustard | nucleus | 24.28 | 32.5 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 30.2 | 32.35 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 32.37 | 31.95 |
| PGSC0003DMT400061942 | Potato | nucleus | 28.9 | 31.85 |
| Solyc04g071360.2.1 | Tomato | nucleus | 29.19 | 30.89 |
| Bra015715.1-P | Field mustard | nucleus | 24.86 | 29.97 |
| AT1G76890.2 | Thale cress | nucleus | 24.86 | 29.91 |
| Solyc12g056510.1.1 | Tomato | nucleus | 27.89 | 29.65 |
| KRG91651 | Soybean | nucleus | 26.59 | 29.21 |
| KRH08698 | Soybean | nucleus | 25.58 | 28.73 |
| KRH70307 | Soybean | nucleus | 24.86 | 28.71 |
| CDX87564 | Canola | nucleus | 16.91 | 27.4 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 21.39 | 26.38 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 20.66 | 25.58 |
| KRG96146 | Soybean | nucleus | 20.23 | 24.22 |
| KRH67857 | Soybean | nucleus | 19.65 | 23.37 |
| KRH32666 | Soybean | nucleus | 19.08 | 22.22 |
| PGSC0003DMT400007016 | Potato | nucleus | 17.34 | 22.14 |
| Bra005777.1-P | Field mustard | nucleus | 18.21 | 21.99 |
| Solyc09g009250.2.1 | Tomato | nucleus | 17.2 | 21.92 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.01 | 21.69 |
| AT5G03680.1 | Thale cress | nucleus | 18.5 | 21.66 |
| CDX70293 | Canola | nucleus | 17.63 | 21.37 |
| Bra009518.1-P | Field mustard | nucleus | 17.49 | 21.19 |
| CDY11266 | Canola | nucleus | 15.46 | 20.98 |
| CDY44379 | Canola | nucleus | 17.63 | 20.71 |
| CDX80883 | Canola | nucleus | 15.17 | 20.59 |
| Bra028824.1-P | Field mustard | nucleus | 17.49 | 20.51 |
| CDY10364 | Canola | nucleus | 14.88 | 20.32 |
| CDY45956 | Canola | cytosol | 2.02 | 19.72 |
| KRH35147 | Soybean | nucleus | 8.09 | 19.65 |
| CDY04893 | Canola | nucleus | 14.31 | 19.53 |
| AT3G10000.1 | Thale cress | nucleus | 13.29 | 19.13 |
| KRH34733 | Soybean | nucleus | 14.16 | 18.08 |
| KRG92051 | Soybean | nucleus | 14.02 | 18.06 |
| TraesCS6B01G020100.1 | Wheat | nucleus | 19.51 | 17.74 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G396900.1 | EnsemblPlantsGene:TraesCS4B01G396900 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | TIGR:cd12203 | MapMan:15.5.20 |
Description
No Description!
Coordinates
chr4B:-:671630765..671634023
Molecular Weight (calculated)
74580.8 Da
IEP (calculated)
7.320
GRAVY (calculated)
-0.760
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAFREAAL KGPLWEQVSR RLAEMGHTRS AKKCREKFEN VDKYYRRTKD GRTGRGDGKT YRFFTELEAL HGASAAHHPP PAHVAVAPPS APAASTIGAY
101: SGVPSAPSRV LLAEPSPPPL LLTHQPVSTE AAACLTTTTA AVVGDASFSD GSDGEDTDET ADGGKRKRRG GSGSWGHGGK AMRFFEGLMR QVMERQEAMQ
201: SRLLEAIERR DQDRMIREEA WRRQEVARLA REQDALAQER AVAASRDAAV VSFIQRITGQ IVPVHAPPSS FPAKPAATVN SVKPPALQPT PVASAAPAPP
301: TPRPPVQAQP NVTTPMRTQP QTPPPQPQQH ATPTATEPQP VTPQPQHLQS KEIVVVHAAE QPPVDMAGGA SPSRWPKAEV HALIQLRTEM ETRYQDTAPK
401: GPLWEDISVG MRRLGYNRSS KRCKEKWENI NKYFKKVKES SRKRPEDSKT CPYFHQLDAL YRTKALASSS SSSPVVHAPV TVLSPVPLSS QTPPPAAQHV
501: EHGAKSSITN GNGHGNGNGA AMQVKASNGA GAAAMFPSPV HAAGNGGNNG TATNKLESKQ EVIPKETATV VPPAVAMNHS YGRNDRRDVY DLDSDSMDED
601: EEDDFDDDDD DDDEEDDAVG VPGGRNINMP PAQYDAHFLQ RQHQQQQHQN HNHNHNVVRP NAANGSGNPP AGNAAPTSAP ATSGTPFLAM VQ
101: SGVPSAPSRV LLAEPSPPPL LLTHQPVSTE AAACLTTTTA AVVGDASFSD GSDGEDTDET ADGGKRKRRG GSGSWGHGGK AMRFFEGLMR QVMERQEAMQ
201: SRLLEAIERR DQDRMIREEA WRRQEVARLA REQDALAQER AVAASRDAAV VSFIQRITGQ IVPVHAPPSS FPAKPAATVN SVKPPALQPT PVASAAPAPP
301: TPRPPVQAQP NVTTPMRTQP QTPPPQPQQH ATPTATEPQP VTPQPQHLQS KEIVVVHAAE QPPVDMAGGA SPSRWPKAEV HALIQLRTEM ETRYQDTAPK
401: GPLWEDISVG MRRLGYNRSS KRCKEKWENI NKYFKKVKES SRKRPEDSKT CPYFHQLDAL YRTKALASSS SSSPVVHAPV TVLSPVPLSS QTPPPAAQHV
501: EHGAKSSITN GNGHGNGNGA AMQVKASNGA GAAAMFPSPV HAAGNGGNNG TATNKLESKQ EVIPKETATV VPPAVAMNHS YGRNDRRDVY DLDSDSMDED
601: EEDDFDDDDD DDDEEDDAVG VPGGRNINMP PAQYDAHFLQ RQHQQQQHQN HNHNHNVVRP NAANGSGNPP AGNAAPTSAP ATSGTPFLAM VQ
001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
Arabidopsis Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.