Factsheet for GSMUA_Achr5P19950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P11760_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	45.61	54.04
GSMUA_Achr11P...	Banana	nucleus	51.21	52.9
GSMUA_Achr1P04100_001	Banana	nucleus	50.15	51.64
GSMUA_Achr9P18800_001	Banana	nucleus	45.0	51.47
GSMUA_Achr4P24780_001	Banana	nucleus	50.76	50.07
GSMUA_Achr2P11910_001	Banana	nucleus	45.91	47.34
GSMUA_Achr4P29130_001	Banana	nucleus	43.64	41.2
Zm00001d032453_P001	Maize	nucleus	47.73	40.18
GSMUA_Achr2P00580_001	Banana	nucleus	41.97	39.52
EER91374	Sorghum	nucleus	48.03	39.28
Zm00001d013849_P001	Maize	nucleus	45.45	38.61
TraesCS1D01G162400.1	Wheat	nucleus, plastid	47.42	38.31
TraesCS1B01G203300.2	Wheat	nucleus	47.12	38.21
TraesCS1A01G176700.2	Wheat	nucleus	47.27	38.19
HORVU1Hr1G046940.4	Barley	nucleus	47.73	38.04
TraesCSU01G029700.1	Wheat	nucleus	44.39	37.23
HORVU4Hr1G089120.1	Barley	nucleus, plastid	44.55	37.07
KXG40355	Sorghum	nucleus, plastid	43.48	36.75
TraesCS5A01G558200.1	Wheat	nucleus, plastid	43.48	36.56
TraesCS4B01G396900.1	Wheat	nucleus	37.42	35.69
GSMUA_Achr8P11770_001	Banana	nucleus	9.24	35.67
Zm00001d027335_P001	Maize	nucleus	42.88	34.98
GSMUA_Achr8P07630_001	Banana	nucleus	17.12	28.39
GSMUA_Achr7P04610_001	Banana	nucleus	17.58	23.97
GSMUA_AchrUn_...	Banana	nucleus	7.27	22.43
GSMUA_Achr1P24120_001	Banana	nucleus	21.36	21.08
GSMUA_AchrUn_...	Banana	nucleus	17.73	16.76
GSMUA_AchrUn_...	Banana	nucleus	10.91	15.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G19950_001	EnsemblPlants:GSMUA_Achr5P19950_001	EnsemblPlants:GSMUA_Achr5T19950_001
InterPro:Homeobox-like_sf	InterPro:IPR017877	UniProt:M0T024	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090
PANTHER:PTHR21654	PANTHER:PTHR21654:SF24	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix
UniParc:UPI0002952056	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G19950_001]

Coordinates

chr5:-:21575187..21579032

Molecular Weight (calculated)

73582.4 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.677

Length

660 amino acids

Sequence
(BLAST)

001: MFCHFPSPSS SSSSIFSSAT STLTSFLYYS FLVTYHLCIS YIWCFSSLFL GFFFALPTPS LCLFSRPFFL FCKLSFLLFS LHVLIPAIPT ASTSSSLSLA
101: PLREGQRGRG SSVGNTTNFD ELAPAVAGGF HDDEALTVGY EAERGGTPGS RWPRQETLAL LKIRSEMDAA FRDATFKGPL WEEVSRKLAE LGYKRSAKKC
201: KEKFENVHKY YKRTKDGRAG RQDGKTYRFF NQLEALHSSA SPPPRRAPQL LESKLRLSPP RPHRPFSSDS TSSSSQQMMT FFQGLMRQVM ERQEAMQQRF
301: LEAIEKREQD RLIREDAWRL QEMARLSREQ ELLSQERAMA ASRDTAVISY LQKISGQPVT SSSAVPASAA AISLTPLPLP PSEPEEGHCF EPVSSSRWPK
401: EEVHALIKLR SGLGSRYQEA GPKGPLWEDI SAGMHRLGYN RSAKRCKEKW ENINKYFKKV KDSNKKRPED SKSCPYFHEL EALYRKKTLG SDIAAGDPGG
501: GSSAVGQQKQ EQDTNPSPLG QQQQRHPAVA EGQNGDNNKN NRSGGNPEAG GGSTVVQVQT RNGQQPPSFP DQEGTMKPED VVKVPTEQRH PPAVMDEHYK
601: MDKPSSDNLD QDDDYEDEDD EDEVQYKLQF QRQIPSGDTA IATTAAATAT ASGTFLAMVQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.