Factsheet for GSMUA_Achr1P04100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24780_001	Banana	nucleus	64.27	61.58
GSMUA_Achr8P11760_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.17	58.89
GSMUA_Achr11P...	Banana	nucleus	56.32	56.49
GSMUA_Achr9P18800_001	Banana	nucleus	50.7	56.33
GSMUA_Achr2P11910_001	Banana	nucleus	53.67	53.75
GSMUA_Achr5P19950_001	Banana	nucleus, plastid	51.64	50.15
GSMUA_Achr4P29130_001	Banana	nucleus	52.57	48.21
Zm00001d032453_P001	Maize	nucleus	50.86	41.58
Zm00001d013849_P001	Maize	nucleus	49.14	40.54
EER91374	Sorghum	nucleus	50.86	40.4
GSMUA_Achr2P00580_001	Banana	nucleus	43.53	39.8
KXG40355	Sorghum	nucleus, plastid	48.21	39.56
HORVU1Hr1G046940.4	Barley	nucleus	49.92	38.65
TraesCS1B01G203300.2	Wheat	nucleus	48.67	38.33
TraesCS1A01G176700.2	Wheat	nucleus	48.83	38.31
TraesCS1D01G162400.1	Wheat	nucleus, plastid	48.83	38.31
TraesCSU01G029700.1	Wheat	nucleus	45.55	37.1
Zm00001d027335_P001	Maize	nucleus	46.65	36.96
HORVU4Hr1G089120.1	Barley	nucleus, plastid	45.4	36.7
TraesCS5A01G558200.1	Wheat	nucleus, plastid	44.31	36.18
TraesCS4B01G396900.1	Wheat	nucleus	38.85	35.98
GSMUA_Achr8P11770_001	Banana	nucleus	9.52	35.67
GSMUA_Achr8P07630_001	Banana	nucleus	17.94	28.89
GSMUA_AchrUn_...	Banana	nucleus	9.05	27.1
GSMUA_Achr7P04610_001	Banana	nucleus	19.66	26.03
GSMUA_Achr1P24120_001	Banana	nucleus	22.78	21.82
GSMUA_AchrUn_...	Banana	nucleus	19.5	17.91
GSMUA_AchrUn_...	Banana	nucleus	10.92	14.93

Protein Annotations

EnsemblPlants:GSMUA_Achr1P04100_001	EnsemblPlants:GSMUA_Achr1T04100_001	EnsemblPlantsGene:GSMUA_Achr1G04100_001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI00029515CD
UniProt:M0RWW8	MapMan:15.5.20	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G04100_001]

Coordinates

chr1:+:3406650..3409971

Molecular Weight (calculated)

70568.2 Da

IEP (calculated)

7.834

GRAVY (calculated)

-0.633

Length

641 amino acids

Sequence
(BLAST)

001: MAPFSTSAVG PGAPLLGIPG PDPLQQQQPL AETASPISSR PPPAGSAPSA DFDELVPAVT GNFPDDVVLA AGDDAERGTG ATANRWPRQE TVALLKIRSE
101: MDAVFRDATL KGPLWEEVSR PLLIMTTASC FLPFPSQLYS RWGGVHNCNI IGLRCFVRLS RYNVIMIISF FLRPFAFSLL KLAELGYKRS AKKCKEKFEN
201: VHKYYKRTKD GRAGRQDGKS YRFFSQLEAL HSGSAAAFPP PAMTPPLGGL QGISSLATGG AAAAAMGISF SSNSSSSRKM MAFFDRLMRQ VMERQEVMQQ
301: RFLEAIEKRE QDRMIRDEAW RRQEMARLNR EQEVLAQERA MAASRDTAII SYLQKISGQT FRQKPVQPLP QKHEDAVGRA SLQEAMSSSS RWPKAEVHAL
401: IKIRSALESK FQDAGPKGPL WEEISARMQQ LGYNRRAKRC KEKWENINKY FKKVKESNKL RPEDSKTCPY FHQLDTLYRN RLLGSSSGSG SGSTAGIQGQ
501: QGHETNPPSK VESNNGKSSS DNNQNGGNSE GGEGPGGSEV PTSNGELSPS FFDVGLKKPE DIVKELMGEP PQQSVMDDYE KLDEADSINL DQDDDEDDDD
601: DDEARKMQYK IQFQRQNVTA GGGGNESAAA ATAGSFLAIV Q

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.