Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005108_P003 | nucleus |
| Zm00001d010811_P002 | nucleus |
| Zm00001d038745_P002 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032453_P001 | Maize | nucleus | 87.9 | 87.12 |
| EER91374 | Sorghum | nucleus | 85.71 | 82.53 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 67.31 | 64.01 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 66.67 | 63.4 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 67.44 | 63.28 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 66.15 | 63.15 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 37.97 | 52.96 |
| GSMUA_Achr11P... | Banana | nucleus | 42.34 | 51.49 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 40.54 | 49.14 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 41.06 | 47.68 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 35.39 | 47.66 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 38.74 | 47.03 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 41.31 | 45.92 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 38.61 | 45.45 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 11.33 | 44.67 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 29.21 | 44.51 |
| Zm00001d027335_P001 | Maize | nucleus | 46.33 | 44.5 |
| Bra015716.1-P | Field mustard | nucleus | 31.53 | 44.46 |
| CDY45955 | Canola | nucleus | 25.1 | 44.32 |
| CDX88320 | Canola | nucleus | 30.76 | 43.93 |
| CDY13568 | Canola | nucleus | 27.16 | 42.8 |
| CDY45957 | Canola | nucleus | 26.64 | 42.42 |
| Zm00001d025960_P002 | Maize | nucleus | 38.35 | 42.09 |
| Bra008285.1-P | Field mustard | nucleus | 29.99 | 41.98 |
| Zm00001d002801_P001 | Maize | nucleus | 42.34 | 41.75 |
| CDY65284 | Canola | nucleus | 29.47 | 41.34 |
| KRG91649 | Soybean | nucleus | 34.23 | 41.3 |
| Bra003702.1-P | Field mustard | nucleus | 24.32 | 41.27 |
| AT1G76880.1 | Thale cress | nucleus | 31.79 | 40.96 |
| CDX68080 | Canola | nucleus | 30.5 | 40.93 |
| CDY48545 | Canola | nucleus, plastid | 29.86 | 40.85 |
| Bra008286.1-P | Field mustard | nucleus | 27.03 | 40.62 |
| KRH35149 | Soybean | nucleus | 34.62 | 40.33 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 32.95 | 39.63 |
| KRH70308 | Soybean | nucleus | 32.17 | 39.62 |
| KRH53849 | Soybean | nucleus | 25.23 | 39.44 |
| Solyc11g005380.1.1 | Tomato | nucleus | 25.1 | 39.39 |
| KRH08699 | Soybean | nucleus | 33.2 | 39.39 |
| KRH38181 | Soybean | nucleus | 24.58 | 38.98 |
| Zm00001d017420_P001 | Maize | nucleus | 33.59 | 38.84 |
| Bra003703.1-P | Field mustard | nucleus | 30.63 | 38.83 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 34.88 | 38.66 |
| PGSC0003DMT400010112 | Potato | nucleus | 24.84 | 38.37 |
| Bra015715.1-P | Field mustard | nucleus | 28.31 | 38.33 |
| KRH64101 | Soybean | nucleus | 24.58 | 38.2 |
| AT1G76890.2 | Thale cress | nucleus | 28.19 | 38.09 |
| Zm00001d051316_P002 | Maize | nucleus | 32.56 | 37.87 |
| Solyc12g056510.1.1 | Tomato | nucleus | 31.53 | 37.63 |
| CDY48546 | Canola | nucleus | 20.33 | 37.62 |
| PGSC0003DMT400061942 | Potato | nucleus | 30.24 | 37.42 |
| Solyc04g071360.2.1 | Tomato | nucleus | 30.37 | 36.09 |
| CDX87564 | Canola | nucleus | 19.43 | 35.36 |
| KRH70307 | Soybean | nucleus | 26.77 | 34.72 |
| KRG91651 | Soybean | nucleus | 28.06 | 34.6 |
| KRH08698 | Soybean | nucleus | 27.16 | 34.25 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 21.62 | 29.95 |
| KRG96146 | Soybean | nucleus | 22.01 | 29.58 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 21.24 | 29.52 |
| KRH35147 | Soybean | nucleus | 10.68 | 29.12 |
| KRH67857 | Soybean | nucleus | 21.49 | 28.69 |
| PGSC0003DMT400007016 | Potato | nucleus | 19.05 | 27.31 |
| Bra005777.1-P | Field mustard | nucleus | 20.08 | 27.23 |
| CDX70293 | Canola | nucleus | 19.69 | 26.8 |
| Solyc09g009250.2.1 | Tomato | nucleus | 18.66 | 26.7 |
| CDX80883 | Canola | nucleus | 17.5 | 26.67 |
| Bra009518.1-P | Field mustard | nucleus | 19.56 | 26.62 |
| KRH32666 | Soybean | nucleus | 20.33 | 26.6 |
| CDY11266 | Canola | nucleus | 17.37 | 26.47 |
| AT5G03680.1 | Thale cress | nucleus | 20.08 | 26.4 |
| Bra028824.1-P | Field mustard | nucleus | 19.69 | 25.93 |
| CDY44379 | Canola | nucleus | 19.56 | 25.81 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.77 | 25.78 |
| CDY10364 | Canola | nucleus | 16.6 | 25.44 |
| CDY04893 | Canola | nucleus | 16.22 | 24.85 |
| Zm00001d014938_P001 | Maize | nucleus | 20.98 | 24.55 |
| KRH34733 | Soybean | nucleus | 17.12 | 24.54 |
| AT3G10000.1 | Thale cress | nucleus | 15.19 | 24.53 |
| KRG92051 | Soybean | nucleus | 16.86 | 24.39 |
| Zm00001d054080_P001 | Maize | nucleus | 20.72 | 22.55 |
| CDY45956 | Canola | cytosol | 1.8 | 19.72 |
Protein Annotations
| EMBL:BT061205 | EnsemblPlants:Zm00001d013849_P001 | EnsemblPlants:Zm00001d013849_T001 | EnsemblPlantsGene:Zm00001d013849 | EntrezGene:100381416 | Gene3D:1.10.10.60 |
| InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 |
| PFscan:PS50090 | ProteinID:AQK64570.1 | ProteinID:AQK64572.1 | SEG:seg | SMART:SM00717 | UniParc:UPI0001948A15 |
| UniProt:C0HFU9 | MapMan:15.5.20 | : | : | : | : |
Description
Trihelix-transcription factor 19Trihelix transcription factor GT-2
Coordinates
chr5:+:22609420..22613883
Molecular Weight (calculated)
82587.9 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.827
Length
777 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQHGGGG GASGGGPAQQ FCAQQVEMPL PFSPVGGAGQ RISLAEAPSP ISSRPPAPAP AQQYDELGPS GAGAVGFDAE GLAAAAAGED GASGGSAGNR
101: WPRQETLELL KIRSDMDTAF RDATLKAPLW EQVSRKLAEK GYNRSAKKCK EKFENVHKYY KRTKESRAGR NDGKTYRFFT QLEALHGTGA APASVASQVG
201: PAISGGVSGA ARPSSAVRVP AEPLPAVSAG VGMPMTTTVG YPSISTSNTE DDYTDEDDSD DEGTEELVGG GADDQRRKRK RVSDGSGKMM RFFEGLMKHV
301: MDRQEAMQQR FLEAIEKREQ DRMIREEAWR RQEMTRLARE QEILAQERSM AASRDAAVLS FIQKITGQTI PMPSIAAPTI NAMPPPSHPK PPPPPQPHPT
401: PIASVSPAPP PPQPPASQTP PPQQQKSPMP ATPQTPAPQR QSTDIVMTPA ETTPHADTQG HEGSGGGATS SRWPKAEVHA LIQLRSTLDT RYQETGPKGP
501: LWEEISAGMR GMGYNRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDALYR NKAAITSSSG AGAMVHANAS SAPQEMVTVT AATPISQTPP
601: PPTQPSQSHH AAKNGGSSNS AGTGTGNGSY ASEHGSRGMQ TQASNGSAAA SMFVGLGGGA ASAAKKPEEI MKEMIEQRQP QQPQAVVGGY NRMDGAGSNN
701: MDDDDDDDED DYDENDNDED DAGNKMQYEI QFQHHHQHPN VVRSNAGAGG GNPPGTTAPS TAAAPTTTAG SFLGMVQ
101: WPRQETLELL KIRSDMDTAF RDATLKAPLW EQVSRKLAEK GYNRSAKKCK EKFENVHKYY KRTKESRAGR NDGKTYRFFT QLEALHGTGA APASVASQVG
201: PAISGGVSGA ARPSSAVRVP AEPLPAVSAG VGMPMTTTVG YPSISTSNTE DDYTDEDDSD DEGTEELVGG GADDQRRKRK RVSDGSGKMM RFFEGLMKHV
301: MDRQEAMQQR FLEAIEKREQ DRMIREEAWR RQEMTRLARE QEILAQERSM AASRDAAVLS FIQKITGQTI PMPSIAAPTI NAMPPPSHPK PPPPPQPHPT
401: PIASVSPAPP PPQPPASQTP PPQQQKSPMP ATPQTPAPQR QSTDIVMTPA ETTPHADTQG HEGSGGGATS SRWPKAEVHA LIQLRSTLDT RYQETGPKGP
501: LWEEISAGMR GMGYNRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDALYR NKAAITSSSG AGAMVHANAS SAPQEMVTVT AATPISQTPP
601: PPTQPSQSHH AAKNGGSSNS AGTGTGNGSY ASEHGSRGMQ TQASNGSAAA SMFVGLGGGA ASAAKKPEEI MKEMIEQRQP QQPQAVVGGY NRMDGAGSNN
701: MDDDDDDDED DYDENDNDED DAGNKMQYEI QFQHHHQHPN VVRSNAGAGG GNPPGTTAPS TAAAPTTTAG SFLGMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.