Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061942 | Potato | nucleus | 92.35 | 96.18 |
| Solyc12g056510.1.1 | Tomato | nucleus | 63.0 | 63.29 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 51.22 | 51.86 |
| Solyc11g005380.1.1 | Tomato | nucleus | 32.87 | 43.43 |
| KXG40355 | Sorghum | nucleus, plastid | 38.23 | 32.01 |
| Zm00001d032453_P001 | Maize | nucleus | 37.31 | 31.12 |
| Zm00001d013849_P001 | Maize | nucleus | 36.09 | 30.37 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 37.92 | 30.36 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 37.77 | 30.23 |
| EER91374 | Sorghum | nucleus | 37.16 | 30.11 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 37.46 | 30.1 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 38.07 | 30.07 |
| TraesCSU01G029700.1 | Wheat | nucleus | 35.78 | 29.73 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 35.47 | 29.55 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 35.63 | 29.38 |
| Zm00001d027335_P001 | Maize | nucleus | 36.24 | 29.3 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 30.89 | 29.19 |
| Solyc11g012720.1.1 | Tomato | nucleus | 15.75 | 25.5 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 6.57 | 25.15 |
| Solyc09g009250.2.1 | Tomato | nucleus | 20.34 | 24.49 |
| Solyc08g061910.2.1 | Tomato | nucleus | 6.42 | 16.8 |
Protein Annotations
| EnsemblPlants:Solyc04g071360.2.1 | EnsemblPlantsGene:Solyc04g071360.2 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF19 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| UniParc:UPI0002766842 | UniProt:K4BTC8 | MapMan:15.5.20 | : | : | : |
Description
No Description!
Coordinates
chr4:+:58341303..58344351
Molecular Weight (calculated)
71940.0 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.869
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGVSGLVSS EGGGDNPESG GGAGSGGSSE IGLGGGSGGG GGSSGGFMTE DGERNSGGNR WPRQETIALL KIRSEMDVIF RDSSLKGPLW EEVSRKMADL
101: GFHRSSKKCK EKFENVYKYH KRTKDGRASK ADGKNYRFFE QLEALENITS HHSLMPVPSS NTRPPPPPLE ATPINMAMPM ASSNVQVTAS QGTIPHHVTI
201: SSAPPPPNSL FAPSHQNAPS SSPVPLPPPP SQQPSPQPAV NPINNIPQQV NASAMSYSTS SSTSSDEDIQ RRHKKKRKWK DYFEKFTKDV INKQEESHRR
301: FLEKLEKREH DRMVREEAWK VEEMARMNRE HDLLVQERAM AAAKDAAVIS FLQKITEQQN IQIPNSINVG PPSAQVQIQL PENPLSAPVP TQIQPTTVTA
401: AAPPQPAPVP VSLPVTIPAP VPALIPSLSL PLTPPVPSKN MELVPKSDNG GDSYSPASSS RWPKAEVEAL IKLRTNLDVK YQENGPKGPL WEEISSGMKK
501: IGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLDALYKE KAKNPETASS TSSFNPSFAL NPDNNQMAPI MARPEQQWPL PQHHESTTRI
601: DHENESDNMD EDDHDDEEDE DDEDENNAYE IVANKQQSSM AAANTTTSTA TTTV
101: GFHRSSKKCK EKFENVYKYH KRTKDGRASK ADGKNYRFFE QLEALENITS HHSLMPVPSS NTRPPPPPLE ATPINMAMPM ASSNVQVTAS QGTIPHHVTI
201: SSAPPPPNSL FAPSHQNAPS SSPVPLPPPP SQQPSPQPAV NPINNIPQQV NASAMSYSTS SSTSSDEDIQ RRHKKKRKWK DYFEKFTKDV INKQEESHRR
301: FLEKLEKREH DRMVREEAWK VEEMARMNRE HDLLVQERAM AAAKDAAVIS FLQKITEQQN IQIPNSINVG PPSAQVQIQL PENPLSAPVP TQIQPTTVTA
401: AAPPQPAPVP VSLPVTIPAP VPALIPSLSL PLTPPVPSKN MELVPKSDNG GDSYSPASSS RWPKAEVEAL IKLRTNLDVK YQENGPKGPL WEEISSGMKK
501: IGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLDALYKE KAKNPETASS TSSFNPSFAL NPDNNQMAPI MARPEQQWPL PQHHESTTRI
601: DHENESDNMD EDDHDDEEDE DDEDENNAYE IVANKQQSSM AAANTTTSTA TTTV
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.