Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g067030.2.1 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03680.1 | Solyc02g067030.2.1 | AT3G01090.2 | 25697797 |
| AT5G03680.1 | Solyc02g067030.2.1 | AT3G01090.2 | 25697797 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007016 | Potato | nucleus | 89.32 | 89.48 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 53.22 | 51.7 |
| KRG96146 | Soybean | nucleus | 50.46 | 47.4 |
| KRH67857 | Soybean | nucleus | 50.28 | 46.91 |
| KRH32666 | Soybean | nucleus | 48.43 | 44.28 |
| GSMUA_Achr8P07630_001 | Banana | nucleus | 32.04 | 43.72 |
| CDY10364 | Canola | nucleus | 39.41 | 42.21 |
| CDY04893 | Canola | nucleus | 39.23 | 42.01 |
| CDX70293 | Canola | nucleus | 43.83 | 41.68 |
| Bra009518.1-P | Field mustard | nucleus | 43.65 | 41.51 |
| CDY11266 | Canola | nucleus | 38.86 | 41.37 |
| Bra028824.1-P | Field mustard | nucleus | 44.94 | 41.36 |
| CDY44379 | Canola | nucleus | 44.75 | 41.26 |
| Bra005777.1-P | Field mustard | nucleus | 43.46 | 41.19 |
| CDX80883 | Canola | nucleus | 38.67 | 41.18 |
| AT5G03680.1 | Thale cress | nucleus | 44.38 | 40.78 |
| AT3G10000.1 | Thale cress | nucleus | 33.89 | 38.25 |
| Solyc11g005380.1.1 | Tomato | nucleus | 24.49 | 26.87 |
| Solyc12g056510.1.1 | Tomato | nucleus | 25.23 | 21.04 |
| Solyc04g071360.2.1 | Tomato | nucleus | 24.49 | 20.34 |
| Zm00001d032453_P001 | Maize | nucleus | 27.99 | 19.39 |
| Solyc11g012720.1.1 | Tomato | nucleus | 14.18 | 19.06 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 28.91 | 18.96 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 28.36 | 18.85 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 28.18 | 18.73 |
| Zm00001d013849_P001 | Maize | nucleus | 26.7 | 18.66 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 26.89 | 18.6 |
| EER91374 | Sorghum | nucleus | 27.62 | 18.59 |
| KXG40355 | Sorghum | nucleus, plastid | 26.7 | 18.57 |
| Zm00001d027335_P001 | Maize | nucleus | 27.62 | 18.54 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 27.62 | 18.43 |
| TraesCSU01G029700.1 | Wheat | nucleus | 26.52 | 18.3 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 26.52 | 18.16 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 21.92 | 17.2 |
| Solyc08g061910.2.1 | Tomato | nucleus | 7.73 | 16.8 |
Protein Annotations
| EnsemblPlants:Solyc09g009250.2.1 | EnsemblPlantsGene:Solyc09g009250.2 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF5 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| UniParc:UPI000276C4D1 | UniProt:K4CQV4 | MapMan:15.5.20 | : | : | : |
Description
No Description!
Coordinates
chr9:+:2634459..2637947
Molecular Weight (calculated)
62461.5 Da
IEP (calculated)
7.001
GRAVY (calculated)
-1.111
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDQYGMADL RQYMNGGRSI FGSIQQVPPE LLPATSHQQQ QHGNLGPGHH HYDMVMGLAQ VPSSSSGHGL TTPHHHHHHQ HHQHEFLTDS STPVAVAATA
101: TGATTTSAGF SGMDQMETGG GGGGDGSGRW PRQETLTLLE IRSRLDPKFK EANQKGPLWD EVSRIMSEEH GYQRTGKKCR EKFENLYKYY KKTKEGKAGR
201: QDGKHYRFFR QLEALYGETS NNISSTSTDI LHQGSHFPYN SVNNMSQDPH NFHHHQASKL SDSMSLSNSS ELNTSSSDDS DHHDKKKRRG KRSLKAKIKD
301: FIDGQMRKLM EKQEEWMEKM MKMIEHKEQE RILREEEWRK QETIRIEKEH NFWANERAWI ETRDAALMEA VNKLSGKDLK STSSNPRSLD EEMVEIHNRN
401: GDVTDSLKDD VDQHWPDSEI TRLIQLRTSM ESRFQQLGIS SSINDHDHDH DHDNDHSNNH DHVLWEEISA KMSILGYDKS ATMCKKRWGS INSYLMKCNK
501: KRKDQNSTSL LCYNSNVQIN NQYYEADGSS CFRYLMGDHH QNL
101: TGATTTSAGF SGMDQMETGG GGGGDGSGRW PRQETLTLLE IRSRLDPKFK EANQKGPLWD EVSRIMSEEH GYQRTGKKCR EKFENLYKYY KKTKEGKAGR
201: QDGKHYRFFR QLEALYGETS NNISSTSTDI LHQGSHFPYN SVNNMSQDPH NFHHHQASKL SDSMSLSNSS ELNTSSSDDS DHHDKKKRRG KRSLKAKIKD
301: FIDGQMRKLM EKQEEWMEKM MKMIEHKEQE RILREEEWRK QETIRIEKEH NFWANERAWI ETRDAALMEA VNKLSGKDLK STSSNPRSLD EEMVEIHNRN
401: GDVTDSLKDD VDQHWPDSEI TRLIQLRTSM ESRFQQLGIS SSINDHDHDH DHDNDHSNNH DHVLWEEISA KMSILGYDKS ATMCKKRWGS INSYLMKCNK
501: KRKDQNSTSL LCYNSNVQIN NQYYEADGSS CFRYLMGDHH QNL
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.