Factsheet for PGSC0003DMT400007016

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063153	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	PGSC0003DMT400063153	AT3G01090.2	25697797
AT5G03680.1	PGSC0003DMT400063153	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009250.2.1	Tomato	nucleus	89.48	89.32
VIT_08s0007g03820.t01	Wine grape	nucleus	55.72	54.02
PGSC0003DMT400072404	Potato	nucleus	38.38	50.12
KRG96146	Soybean	nucleus	52.4	49.13
KRH67857	Soybean	nucleus	52.4	48.8
KRH32666	Soybean	nucleus	50.92	46.46
GSMUA_Achr8P07630_001	Banana	nucleus	31.55	42.96
CDY10364	Canola	nucleus	39.85	42.6
CDX80883	Canola	nucleus	39.11	41.57
CDX70293	Canola	nucleus	43.73	41.51
CDY11266	Canola	nucleus	38.93	41.37
Bra009518.1-P	Field mustard	nucleus	43.54	41.33
CDY04893	Canola	nucleus	38.56	41.22
Bra005777.1-P	Field mustard	nucleus	43.17	40.84
Bra028824.1-P	Field mustard	nucleus	44.28	40.68
CDY44379	Canola	nucleus	44.1	40.58
AT5G03680.1	Thale cress	nucleus	43.36	39.76
AT3G10000.1	Thale cress	nucleus	34.13	38.46
PGSC0003DMT400010112	Potato	nucleus	23.43	25.25
PGSC0003DMT400061942	Potato	nucleus	24.91	21.5
Zm00001d032453_P001	Maize	nucleus	28.78	19.9
PGSC0003DMT400080676	Potato	nucleus	16.97	19.74
PGSC0003DMT400034607	Potato	nucleus	13.84	19.28
KXG40355	Sorghum	nucleus, plastid	27.49	19.08
Zm00001d013849_P001	Maize	nucleus	27.31	19.05
TraesCS1D01G162400.1	Wheat	nucleus, plastid	28.6	18.97
Zm00001d027335_P001	Maize	nucleus	28.23	18.91
TraesCS1A01G176700.2	Wheat	nucleus	28.41	18.85
HORVU1Hr1G046940.4	Barley	nucleus	28.78	18.84
EER91374	Sorghum	nucleus	28.04	18.84
TraesCS5A01G558200.1	Wheat	nucleus, plastid	27.12	18.73
TraesCS1B01G203300.2	Wheat	nucleus	27.86	18.55
TraesCSU01G029700.1	Wheat	nucleus	26.75	18.42
HORVU4Hr1G089120.1	Barley	nucleus, plastid	26.75	18.29
TraesCS4B01G396900.1	Wheat	nucleus	22.14	17.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400007016	EnsemblPlantsGene:PGSC0003DMG400002710	EntrezGene:102589721	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090
PGSC:PGSC0003DMG400002710	RefSeq:XP_006341153.1	SEG:seg	SMART:SM00717	UniParc:UPI000296EE32	UniProt:M0ZSB1
MapMan:15.5.20	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002710]

Coordinates

chr9:-:3631615..3635107

Molecular Weight (calculated)

62438.8 Da

IEP (calculated)

6.928

GRAVY (calculated)

-1.089

Length

542 amino acids

Sequence
(BLAST)

001: MEDQYGMADL RQYMNGGRSI FGSIQQVPPE LLPATSHQQQ QQHRNLGPGH HQYEMVMGLA QVPSSSSGHG LTTPHHHHQH EFLTDSSTPV AVAATAIGTT
101: TTSAGFSGMD QMEIGGGGGG DGSGRWPRQE TLTLLEIRSR LDSKFKEANQ KGPLWDEVSR IMSEEHGYQR TGKKCREKFE NLYKYYKKTK EGKAGRQDGK
201: HYRFFRQLEA LYGETSNNIS STSTEVLHQG SHFPYNSVNN NMNQDPHNFH HVHQGPKISD SISLSNSSEF NTTSSDDSDQ EKKKKRRGKR SLKAKIKDFI
301: DGQMRKLMEK QEEWLEKMMK MIEHKEQERI LREEEWRNQE TIRMEREHKF WANERAWIET RDAALMEAVN KLSGKDLKST LDEEMVDNRR GDVRDSLKDD
401: DVDQHWPDSE ITRLIQLRTS MESRYQQLGI SSSIDDHDND HDHVLWEEIS EKMAILGYEK SATMCKKRWG SINSYLMKCN KKRKEQNSTS LLCYNGNVQI
501: NNQYYEADGS SCFRYLMGDH HQNLWENYEL KLSKGGDGGG NN

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.