Factsheet for VIT_08s0007g03820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0108g01230.t01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	VIT_14s0108g01230.t01	AT3G01090.2	25697797
AT5G03680.1	VIT_14s0108g01230.t01	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96146	Soybean	nucleus	64.22	62.11
KRH67857	Soybean	nucleus	64.04	61.51
KRH32666	Soybean	nucleus	61.0	57.41
PGSC0003DMT400007016	Potato	nucleus	54.02	55.72
Solyc09g009250.2.1	Tomato	nucleus	51.7	53.22
VIT_13s0074g00400.t01	Wine grape	nucleus	51.88	51.69
PGSC0003DMT400072404	Potato	nucleus	37.21	50.12
CDY10364	Canola	nucleus	42.04	46.35
CDY44379	Canola	nucleus	48.48	46.01
GSMUA_Achr8P07630_001	Banana	nucleus	32.74	45.98
CDY04893	Canola	nucleus	41.68	45.96
CDX70293	Canola	nucleus	46.87	45.88
AT5G03680.1	Thale cress	nucleus	48.48	45.85
Bra028824.1-P	Field mustard	nucleus	48.3	45.76
Bra009518.1-P	Field mustard	nucleus	46.69	45.71
CDY11266	Canola	nucleus	40.79	44.71
CDX80883	Canola	nucleus	40.43	44.31
Bra005777.1-P	Field mustard	nucleus	45.08	43.98
AT3G10000.1	Thale cress	nucleus	37.21	43.24
VIT_04s0044g00510.t01	Wine grape	nucleus	25.94	28.43
VIT_00s0956g00030.t01	Wine grape	nucleus	9.84	26.07
VIT_00s0259g00210.t01	Wine grape	nucleus	9.84	26.07
VIT_18s0072g00670.t01	Wine grape	nucleus	27.37	23.68
VIT_02s0025g03220.t01	Wine grape	nucleus	30.59	23.3
KXG40355	Sorghum	nucleus, plastid	30.77	22.02
Zm00001d032453_P001	Maize	nucleus	30.05	21.43
Zm00001d027335_P001	Maize	nucleus	30.95	21.38
Zm00001d013849_P001	Maize	nucleus	29.52	21.24
TraesCSU01G029700.1	Wheat	nucleus	29.87	21.22
EER91374	Sorghum	nucleus	30.41	21.07
VIT_14s0030g01860.t01	Wine grape	plastid	23.08	20.98
TraesCS5A01G558200.1	Wheat	nucleus, plastid	29.16	20.76
TraesCS4B01G396900.1	Wheat	nucleus	25.58	20.66
TraesCS1D01G162400.1	Wheat	nucleus, plastid	29.87	20.44
HORVU4Hr1G089120.1	Barley	nucleus, plastid	28.98	20.43
TraesCS1A01G176700.2	Wheat	nucleus	29.7	20.32
HORVU1Hr1G046940.4	Barley	nucleus	29.87	20.17
TraesCS1B01G203300.2	Wheat	nucleus	28.98	19.9
VIT_04s0008g01850.t01	Wine grape	nucleus	18.96	16.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256247	wikigene:100256247	MapMan:15.5.20	EMBL:AM442910	ProteinID:CAN71904
ProteinID:CAN71904.1	ProteinID:CCB55404	ProteinID:CCB55404.1	UniProt:F6HKI2	EMBL:FN595991	InterPro:IPR017877
EntrezGene:LOC100256247	wikigene:LOC100256247	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654
PANTHER:PTHR21654:SF5	InterPro:SANT/Myb	SMART:SM00717	UniParc:UPI0001983DF7	ArrayExpress:VIT_08s0007g03820	EnsemblPlantsGene:VIT_08s0007g03820
EnsemblPlants:VIT_08s0007g03820.t01	RefSeq:XP_002277307	RefSeq:XP_002277307.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:17800321..17802467

Molecular Weight (calculated)

63946.7 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.982

Length

559 amino acids

Sequence
(BLAST)

001: MEDHHHYGMA DLRQFMNTRP HFPPIPHHPD LFPAHHHHRT LTPAQPYDLM MVGRQVTHDM MSRGLHDFVT DSAAPPPTTT ATNTNTVVPT SNATLTGLDA
101: DAACLGGDAS TGRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRIM SEEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY
201: GDTSNAVSVP ENHLAGSSLT FHTATNLNIA TQNQEIFQTP KLCDSLSLSN SSDFDTSSSE DDDHNNTGPT ENGSTDKKNR RSRRSWKVKI KDFIDSQMRK
301: LMEKQEAWLE KMLKALEHKE QERILREEEW RKQEAARLDR EHKFWATQRA WIEARDAALM DTLQKLTGRE LKVPSPEELM ATQHRNPGER QNENGSETVS
401: NSVKGDSWPE SEITRLMQLR TNMESRFQQA GSSEEVLWED IAGKMACLGY DRSAIMCKDK WNSINNYLLR TKECNKKRKE NSRSCTYFLS NETLYNQGGA
501: YCEISEPGPE MARLQPNEGS PPSNSNAGSA VPDSCFRFLM ADGNLWENYA LKLNKGDNQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.