Factsheet for VIT_13s0074g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03820.t01	Wine grape	nucleus	51.69	51.88
GSMUA_Achr8P07630_001	Banana	nucleus	31.91	44.97
KRG92051	Soybean	nucleus	41.89	43.76
KRH34733	Soybean	nucleus	41.35	42.8
VIT_04s0044g00510.t01	Wine grape	nucleus	26.38	29.02
VIT_00s0956g00030.t01	Wine grape	nucleus	9.8	26.07
VIT_00s0259g00210.t01	Wine grape	nucleus	9.63	25.59
VIT_18s0072g00670.t01	Wine grape	nucleus	28.7	24.92
VIT_02s0025g03220.t01	Wine grape	nucleus	30.3	23.16
Zm00001d032453_P001	Maize	nucleus	30.3	21.68
Zm00001d013849_P001	Maize	nucleus	29.95	21.62
TraesCSU01G029700.1	Wheat	nucleus	30.3	21.6
TraesCS5A01G558200.1	Wheat	nucleus, plastid	30.12	21.53
HORVU4Hr1G089120.1	Barley	nucleus, plastid	30.3	21.44
TraesCS4B01G396900.1	Wheat	nucleus	26.38	21.39
VIT_14s0030g01860.t01	Wine grape	plastid	23.35	21.3
KXG40355	Sorghum	nucleus, plastid	29.23	21.0
EER91374	Sorghum	nucleus	29.95	20.82
TraesCS1D01G162400.1	Wheat	nucleus, plastid	30.3	20.81
HORVU1Hr1G046940.4	Barley	nucleus	30.66	20.77
Zm00001d027335_P001	Maize	nucleus	29.95	20.77
TraesCS1A01G176700.2	Wheat	nucleus	30.12	20.69
TraesCS1B01G203300.2	Wheat	nucleus	29.77	20.52
VIT_04s0008g01850.t01	Wine grape	nucleus	19.79	17.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100255868	wikigene:100255868	MapMan:15.5.20	ProteinID:CCB62321	ProteinID:CCB62321.1
UniProt:F6I5V3	EMBL:FN596753	InterPro:IPR017877	EntrezGene:LOC100255868	wikigene:LOC100255868	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF12	InterPro:SANT/Myb	SMART:SM00717
UniParc:UPI000210A28F	ArrayExpress:VIT_13s0074g00400	EnsemblPlantsGene:VIT_13s0074g00400	EnsemblPlants:VIT_13s0074g00400.t01	RefSeq:XP_002267674	RefSeq:XP_002267674.2
RefSeq:XP_002267674.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:8080808..8083694

Molecular Weight (calculated)

64201.1 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.894

Length

561 amino acids

Sequence
(BLAST)

001: MEMGDQYGLP DLRQFMARPS HFPAVPHPTE PYLHHYEAIM VGSHMGEVVV PRGLVDFHGD SATATATPTA TATAAATAAS VVGVGGLEME CGGVGGDGGN
101: SRWPRQETLT LLEIRSRLDP KFKEANQKGP LWAEVSRIMA EEHGYQRSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETSNQASVSE
201: THLAGNTTLL YQTTNNTTIN QANQEALQDH KFCESHSFSN SSEFETSSSE NNDDDLSAIA YMMNHSMEKK RGVDDGQSYR RVRKSLKGKI KEFVGLHMKK
301: IMDTQEAWME KMLTTIEHKE QERLSREEEW RKQEAARFDR EYKFWASERA WIEARDAALM EALKKFTGKE LKLSSPDGLM DKEIQDQNES MEDIVNEVPD
401: DTTYSRWPEQ ELSSLIHLRT SMESRFQDSG YSEESLWEEI ATRMGCLGYE RSAMRCKQKW ENINIYLNKT TEHSKKRKEN LRTCTYFQPL DPYHGQEIMA
501: KQGSENVGLQ KNSEDHLSPS NSSVGTTVHG SCLNILLDEE HLWEDYGVKP SMGKNQQVWH K

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.