Factsheet for VIT_18s0072g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061942	Potato	nucleus	52.32	53.82
Solyc12g056510.1.1	Tomato	nucleus	53.41	53.0
VIT_04s0044g00510.t01	Wine grape	nucleus	41.02	51.96
Solyc04g071360.2.1	Tomato	nucleus	51.86	51.22
VIT_00s0956g00030.t01	Wine grape	nucleus	13.47	41.23
VIT_00s0259g00210.t01	Wine grape	nucleus	13.47	41.23
VIT_02s0025g03220.t01	Wine grape	nucleus	40.56	35.69
Zm00001d032453_P001	Maize	nucleus	41.02	33.8
Zm00001d013849_P001	Maize	nucleus	39.63	32.95
EER91374	Sorghum	nucleus	40.25	32.22
GSMUA_Achr8P11770_001	Banana	nucleus	8.36	31.58
TraesCS1A01G176700.2	Wheat	nucleus	39.78	31.46
TraesCS1D01G162400.1	Wheat	nucleus, plastid	39.63	31.33
TraesCS1B01G203300.2	Wheat	nucleus	39.32	31.2
HORVU1Hr1G046940.4	Barley	nucleus	39.94	31.16
KXG40355	Sorghum	nucleus, plastid	37.62	31.11
TraesCS5A01G558200.1	Wheat	nucleus, plastid	37.77	31.08
TraesCSU01G029700.1	Wheat	nucleus	37.62	30.88
HORVU4Hr1G089120.1	Barley	nucleus, plastid	37.62	30.64
TraesCS4B01G396900.1	Wheat	nucleus	32.35	30.2
Zm00001d027335_P001	Maize	nucleus	36.38	29.05
VIT_13s0074g00400.t01	Wine grape	nucleus	24.92	28.7
VIT_08s0007g03820.t01	Wine grape	nucleus	23.68	27.37
VIT_14s0030g01860.t01	Wine grape	plastid	24.92	26.18
VIT_04s0008g01850.t01	Wine grape	nucleus	23.07	23.1

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100241901	wikigene:100241901	MapMan:15.5.20	ProteinID:CCB44866	ProteinID:CCB44866.1
ncoils:Coil	UniProt:F6GY30	EMBL:FN594968	InterPro:IPR017877	EntrezGene:LOC100241901	wikigene:LOC100241901
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF50	InterPro:SANT/Myb
SMART:SM00717	UniParc:UPI0002108381	ArrayExpress:VIT_18s0072g00670	EnsemblPlantsGene:VIT_18s0072g00670	EnsemblPlants:VIT_18s0072g00670.t01	RefSeq:XP_002266195
RefSeq:XP_002266195.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:19897547..19900430

Molecular Weight (calculated)

72529.2 Da

IEP (calculated)

7.001

GRAVY (calculated)

-1.030

Length

646 amino acids

Sequence
(BLAST)

001: MLGVSGLLGS SGDGAAAAVE HEGGGGGGGG GGGGGSNSGG YGEEDRGRGE EGDRGSAGNR WPRQETLALL KIRSDMDVTF RDSSLKGPLW EEVSRKLAEL
101: GYHRSAKKCK EKFENVFKYH RRTKEGRASK ADGKTYRFFD QLEALETQPS LASLPHSKPP APAVLAATMP LANLPTTLPE ITVPSTLPNP TNSTANPTIP
201: TIPSPTPPTS RHPPHNNVPT AHPAMAANFL SNSTSSSTSS DEELERRGKR KRKWKAFFQR LMKDVIERQE ELQKRFLEAI EKREHDRMVR EEAWKMQEMA
301: RMNREHELLV QERSIAAAKD AAVIAFLQKI SEQQNPVQLQ DSTPPLPQPQ AGPPQPPPPQ PQLQLVKVLE PRKMDNGGGA ENLVPTSSSR WPKAEVQALI
401: RLRTSLDVKY QENGPKGPLW EEISAGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYKEK NKMEINSFNP SYPLLKPENP
501: MVPIMVQPEQ QWPLHPEMNR SESGMEDMES ENNMEQNQED DEDDGEEEQE GDEDDEDDGG GYEIRVWHLT GRAVANGNGS GSDRRSCRRE DEWVRFRLAR
601: WGCSKNFKKK NLYFREEDGK KNKHMGCSLY NGLMGEGAEM GEMKEP

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.