Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071360.2.1 | Tomato | nucleus | 63.29 | 63.0 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 53.0 | 53.41 |
| Solyc11g005380.1.1 | Tomato | nucleus | 33.33 | 43.84 |
| Zm00001d013849_P001 | Maize | nucleus | 37.63 | 31.53 |
| Zm00001d032453_P001 | Maize | nucleus | 37.79 | 31.38 |
| KXG40355 | Sorghum | nucleus, plastid | 36.41 | 30.35 |
| EER91374 | Sorghum | nucleus | 37.48 | 30.24 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 37.94 | 30.23 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 37.94 | 30.23 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 37.63 | 30.1 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 37.94 | 29.83 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 34.56 | 28.66 |
| Zm00001d027335_P001 | Maize | nucleus | 35.33 | 28.43 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 34.41 | 28.25 |
| TraesCSU01G029700.1 | Wheat | nucleus | 34.1 | 28.21 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 29.65 | 27.89 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 7.07 | 26.9 |
| Solyc11g012720.1.1 | Tomato | nucleus | 16.44 | 26.49 |
| Solyc09g009250.2.1 | Tomato | nucleus | 21.04 | 25.23 |
| Solyc08g061910.2.1 | Tomato | nucleus | 7.07 | 18.4 |
Protein Annotations
| EnsemblPlants:Solyc12g056510.1.1 | EnsemblPlantsGene:Solyc12g056510.1 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF19 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | UniParc:UPI000276A036 | UniProt:K4DFY2 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr12:-:62444840..62447203
Molecular Weight (calculated)
72096.4 Da
IEP (calculated)
7.081
GRAVY (calculated)
-0.911
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGVSSSLIA SSNTSITAGA AGDGAAISAA PSQLAPPPQE APESGGSSEG GGGGGDLSIG GEDGERNSGG NRWPRQETLA LLKIRSEMDV VFKDSSLKGP
101: LWEEVSRKLA ELGYHRSAKK CKEKFENVYK YHRRTKDGRA SKADGKTYRF FDQLQALENN PSSHSNIPPP PLAATPITMA MPMRSGNNSA NPPMPTPTPT
201: PQNHNHFFSV SQKSVVTGAA QPAVMTAPAL PLSQVPIGNN NLNQMHRPQG NTTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK
301: QEELQKKFLE TLEKRERDRL MREEAWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ KITEQQNTQT PNSTNNTSPS PFPIAQIQLK LSEKPFSTPP
401: QPQPQPSATA VSLPMTIHTP TPAPPQTLTL PVVSSKSLEP PKSDNGGENF SPASSSRWPK EEIEALISLR TCLDLKYQEN GPKGPLWEEI SSGMRKIGYN
501: RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL EALYKEKAKL EPVPHNTTFG LTPQNNPPPP PPPIMAQPEQ QWPIPQNQLH QQNRDHHHDN
601: ESDSMDHDLE EDEDEDEEDE GNGYEIIITN KQQSSSMAAT PVTTTTSAAA V
101: LWEEVSRKLA ELGYHRSAKK CKEKFENVYK YHRRTKDGRA SKADGKTYRF FDQLQALENN PSSHSNIPPP PLAATPITMA MPMRSGNNSA NPPMPTPTPT
201: PQNHNHFFSV SQKSVVTGAA QPAVMTAPAL PLSQVPIGNN NLNQMHRPQG NTTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK
301: QEELQKKFLE TLEKRERDRL MREEAWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ KITEQQNTQT PNSTNNTSPS PFPIAQIQLK LSEKPFSTPP
401: QPQPQPSATA VSLPMTIHTP TPAPPQTLTL PVVSSKSLEP PKSDNGGENF SPASSSRWPK EEIEALISLR TCLDLKYQEN GPKGPLWEEI SSGMRKIGYN
501: RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL EALYKEKAKL EPVPHNTTFG LTPQNNPPPP PPPIMAQPEQ QWPIPQNQLH QQNRDHHHDN
601: ESDSMDHDLE EDEDEDEEDE GNGYEIIITN KQQSSSMAAT PVTTTTSAAA V
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.