Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400010112 | Potato | nucleus | 95.56 | 94.04 |
VIT_04s0044g00510.t01 | Wine grape | nucleus | 49.49 | 48.04 |
KRH53849 | Soybean | nucleus | 47.47 | 47.28 |
KRH38181 | Soybean | nucleus | 46.67 | 47.14 |
KRH64101 | Soybean | nucleus | 46.67 | 46.2 |
Solyc12g056510.1.1 | Tomato | nucleus | 43.84 | 33.33 |
Solyc04g071360.2.1 | Tomato | nucleus | 43.43 | 32.87 |
KXG40355 | Sorghum | nucleus, plastid | 41.01 | 25.99 |
Zm00001d032453_P001 | Maize | nucleus | 40.2 | 25.38 |
Solyc11g012720.1.1 | Tomato | nucleus | 20.61 | 25.25 |
Zm00001d013849_P001 | Maize | nucleus | 39.39 | 25.1 |
Solyc09g009250.2.1 | Tomato | nucleus | 26.87 | 24.49 |
TraesCS4B01G396900.1 | Wheat | nucleus | 34.14 | 24.42 |
EER91374 | Sorghum | nucleus | 39.8 | 24.41 |
Zm00001d027335_P001 | Maize | nucleus | 39.8 | 24.35 |
TraesCS1A01G176700.2 | Wheat | nucleus | 39.8 | 24.11 |
TraesCS1B01G203300.2 | Wheat | nucleus | 39.6 | 24.08 |
TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 39.6 | 23.99 |
TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 37.98 | 23.95 |
TraesCSU01G029700.1 | Wheat | nucleus | 37.98 | 23.89 |
HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 37.78 | 23.58 |
HORVU1Hr1G046940.4 | Barley | nucleus | 39.39 | 23.55 |
GSMUA_Achr8P11770_001 | Banana | nucleus | 7.88 | 22.81 |
Solyc08g061910.2.1 | Tomato | nucleus | 7.68 | 15.2 |
Protein Annotations
EnsemblPlants:Solyc11g005380.1.1 | EnsemblPlantsGene:Solyc11g005380.1 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF14 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
SMART:SM00717 | UniParc:UPI00027697B0 | UniProt:K4D4F1 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr11:+:304294..305925
Molecular Weight (calculated)
56247.3 Da
IEP (calculated)
7.797
GRAVY (calculated)
-0.986
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MLESSVLLEN TAAGGAVTGA DGEASELKNE GGGGGGSVGG GSEEEDKNFS GGNRWPHEET LALLKIRSEM DVAFRDSNLK SPLWDEISRK MAELGYNRNA
101: KKCREKFENI YKYHKRTKDG RSGRQTGKNY RFFEQLELLD SQSLFSSPPL NHSQINRMET MPVPMPMPMT MIKPAASGCQ DFGMDHSRVR GFNPGFMSTS
201: TSTTSSSGKE SDGSVKKKRK LASYFERLMK EVLDKQEDLQ NKFLEAMEKC EKDRIARDEA WKMQEIARLK KEQEALAHER AISAAKDAAV IAFLQKVSDQ
301: TIQLQLPTDL PHRHTEERES ESMKTIGNQE NVVMQQDNDK ENIDKQEIDS AGENSNSFQT NSSSRWPKAE VEALIKLRTN VDLQYQDNGS SKGPLWEDIS
401: CGMKKLGYDR NAKRCKEKWE NINKYYRRVK ESQKKRPEDS KTCPYFHQLD SIYQNKSKKQ LPIMETPGSN MKAGEILMQI INQQQQQQAL ERTEC
101: KKCREKFENI YKYHKRTKDG RSGRQTGKNY RFFEQLELLD SQSLFSSPPL NHSQINRMET MPVPMPMPMT MIKPAASGCQ DFGMDHSRVR GFNPGFMSTS
201: TSTTSSSGKE SDGSVKKKRK LASYFERLMK EVLDKQEDLQ NKFLEAMEKC EKDRIARDEA WKMQEIARLK KEQEALAHER AISAAKDAAV IAFLQKVSDQ
301: TIQLQLPTDL PHRHTEERES ESMKTIGNQE NVVMQQDNDK ENIDKQEIDS AGENSNSFQT NSSSRWPKAE VEALIKLRTN VDLQYQDNGS SKGPLWEDIS
401: CGMKKLGYDR NAKRCKEKWE NINKYYRRVK ESQKKRPEDS KTCPYFHQLD SIYQNKSKKQ LPIMETPGSN MKAGEILMQI INQQQQQQAL ERTEC
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.