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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010112 Potato nucleus 95.56 94.04
VIT_04s0044g00510.t01 Wine grape nucleus 49.49 48.04
KRH53849 Soybean nucleus 47.47 47.28
KRH38181 Soybean nucleus 46.67 47.14
KRH64101 Soybean nucleus 46.67 46.2
Solyc12g056510.1.1 Tomato nucleus 43.84 33.33
Solyc04g071360.2.1 Tomato nucleus 43.43 32.87
KXG40355 Sorghum nucleus, plastid 41.01 25.99
Zm00001d032453_P001 Maize nucleus 40.2 25.38
Solyc11g012720.1.1 Tomato nucleus 20.61 25.25
Zm00001d013849_P001 Maize nucleus 39.39 25.1
Solyc09g009250.2.1 Tomato nucleus 26.87 24.49
TraesCS4B01G396900.1 Wheat nucleus 34.14 24.42
EER91374 Sorghum nucleus 39.8 24.41
Zm00001d027335_P001 Maize nucleus 39.8 24.35
TraesCS1A01G176700.2 Wheat nucleus 39.8 24.11
TraesCS1B01G203300.2 Wheat nucleus 39.6 24.08
TraesCS1D01G162400.1 Wheat nucleus, plastid 39.6 23.99
TraesCS5A01G558200.1 Wheat nucleus, plastid 37.98 23.95
TraesCSU01G029700.1 Wheat nucleus 37.98 23.89
HORVU4Hr1G089120.1 Barley nucleus, plastid 37.78 23.58
HORVU1Hr1G046940.4 Barley nucleus 39.39 23.55
GSMUA_Achr8P11770_001 Banana nucleus 7.88 22.81
Solyc08g061910.2.1 Tomato nucleus 7.68 15.2
Protein Annotations
EnsemblPlants:Solyc11g005380.1.1EnsemblPlantsGene:Solyc11g005380.1Gene3D:1.10.10.60InterPro:IPR017877InterPro:Myb-like_domInterPro:SANT/Myb
ncoils:CoilPANTHER:PTHR21654PANTHER:PTHR21654:SF14PFAM:PF13837PFscan:PS50090SEG:seg
SMART:SM00717UniParc:UPI00027697B0UniProt:K4D4F1MapMan:15.5.20::
Description
No Description!
Coordinates
chr11:+:304294..305925
Molecular Weight (calculated)
56247.3 Da
IEP (calculated)
7.797
GRAVY (calculated)
-0.986
Length
495 amino acids
Sequence
(BLAST)
001: MLESSVLLEN TAAGGAVTGA DGEASELKNE GGGGGGSVGG GSEEEDKNFS GGNRWPHEET LALLKIRSEM DVAFRDSNLK SPLWDEISRK MAELGYNRNA
101: KKCREKFENI YKYHKRTKDG RSGRQTGKNY RFFEQLELLD SQSLFSSPPL NHSQINRMET MPVPMPMPMT MIKPAASGCQ DFGMDHSRVR GFNPGFMSTS
201: TSTTSSSGKE SDGSVKKKRK LASYFERLMK EVLDKQEDLQ NKFLEAMEKC EKDRIARDEA WKMQEIARLK KEQEALAHER AISAAKDAAV IAFLQKVSDQ
301: TIQLQLPTDL PHRHTEERES ESMKTIGNQE NVVMQQDNDK ENIDKQEIDS AGENSNSFQT NSSSRWPKAE VEALIKLRTN VDLQYQDNGS SKGPLWEDIS
401: CGMKKLGYDR NAKRCKEKWE NINKYYRRVK ESQKKRPEDS KTCPYFHQLD SIYQNKSKKQ LPIMETPGSN MKAGEILMQI INQQQQQQAL ERTEC
Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.