Factsheet for Solyc11g012720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067570.2.1
Solyc02g087360.2.1
Solyc02g087370.1.1
Solyc02g087380.1.1
Solyc02g087390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47660.1	Solyc02g067570.2.1	AT3G01320.1	19962994
AT5G47660.1	Solyc02g087360.2.1	AT3G01320.1	19962994
AT5G47660.1	Solyc02g087370.1.1	AT3G01320.1	19962994
AT5G47660.1	Solyc02g087380.1.1	AT3G01320.1	19962994
AT5G47660.1	Solyc02g087390.1.1	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034607	Potato	nucleus	91.34	94.86
VIT_00s0259g00210.t01	Wine grape	nucleus	27.48	52.61
VIT_00s0956g00030.t01	Wine grape	nucleus	27.23	52.13
KRH36613	Soybean	nucleus	36.88	44.08
KRH11595	Soybean	nucleus	35.89	42.9
AT5G47660.1	Thale cress	nucleus	27.97	28.39
CDY40550	Canola	nucleus	27.23	28.13
CDY28914	Canola	nucleus	26.73	27.91
Bra022149.1-P	Field mustard	nucleus	26.73	27.91
Bra024925.1-P	Field mustard	nucleus	19.8	24.46
CDY17716	Canola	nucleus	19.8	23.05
Solyc11g005380.1.1	Tomato	nucleus	25.25	20.61
Solyc12g056510.1.1	Tomato	nucleus	26.49	16.44
CDX77787	Canola	nucleus	25.74	16.2
Solyc04g071360.2.1	Tomato	nucleus	25.5	15.75
Solyc09g009250.2.1	Tomato	nucleus	19.06	14.18
Solyc08g061910.2.1	Tomato	nucleus	6.19	10.0

Protein Annotations

EnsemblPlants:Solyc11g012720.1.1	EnsemblPlantsGene:Solyc11g012720.1	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF7	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI000276A106
UniProt:K4D676	MapMan:15.5.20	:	:	:	:

Description

No Description!

Coordinates

chr11:+:5485302..5487293

Molecular Weight (calculated)

45819.2 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.698

Length

404 amino acids

Sequence
(BLAST)

001: MEPLIDGDGH PPNDITSFAD NLAPFPESTN VVYENPSAVI APPGIHRLPV SPVRKLRPVR FGNGRNYVDM VDSNCDIDEA LMTCTSDLGF LSQFSAQNAS
101: TVLPMECGFV NSLDENGVAK CSEVGISAVQ QMKSELDADC FNLISQSRIL ETEFSSSSDS ESSEPIEEHL NRKRKRGTRK SLKLSLEDMV KKLMDKQEQM
201: HKQLIEMLEK KEEERIIREE AWKQQEVERA KRDVELRAEE TSRNLALIAF LENLLGEDFQ IPKSSEVTSL VKDEGEVHGQ EADIRSDPCN RRWPKLEVQA
301: LVSVRTRLDH KFLKGAKGSV WEEVADGLAK MGYIRTAKKC KEKWENINKY YKRTIDSGKT RPKNYRSCPY FHELDSLYKN GLLNQGAGNC VKIETENKNV
401: DPEE

Best Arabidopsis Sequence Match ( AT5G47660.1 )
(BLAST)

001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.