Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g011650.2.1 | |
| Solyc05g054410.2.1 | |
| Solyc06g082520.2.1 | |
| Solyc09g008440.1.1 | |
| Solyc09g091440.2.1 | nucleus |
| Solyc11g012720.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087360.2.1 | Tomato | nucleus | 76.71 | 76.99 |
| KRH18559 | Soybean | nucleus | 23.0 | 65.96 |
| Solyc02g087370.1.1 | Tomato | cytosol | 9.27 | 65.1 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 64.24 | 62.53 |
| KRG93437 | Soybean | nucleus | 62.17 | 59.77 |
| KRH18561 | Soybean | nucleus | 38.8 | 57.98 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.86 | 57.66 |
| CDX78604 | Canola | nucleus | 54.6 | 54.52 |
| Bra006276.1-P | Field mustard | nucleus | 54.38 | 54.46 |
| CDX91007 | Canola | nucleus | 53.12 | 54.12 |
| CDX70587 | Canola | nucleus | 54.3 | 54.02 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 54.45 | 53.5 |
| AT5G15020.1 | Thale cress | nucleus | 54.23 | 53.47 |
| Bra023501.1-P | Field mustard | nucleus | 52.89 | 53.37 |
| CDX85568 | Canola | nucleus | 52.89 | 53.37 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 52.67 | 52.79 |
| CDY28683 | Canola | mitochondrion, nucleus | 52.37 | 52.45 |
| Solyc05g006540.2.1 | Tomato | nucleus | 50.89 | 50.44 |
| Solyc02g087390.1.1 | Tomato | cytosol | 16.17 | 42.83 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 9.27 | 42.23 |
| Solyc10g047970.1.1 | Tomato | cytosol | 6.82 | 40.71 |
| Solyc11g045320.1.1 | Tomato | cytosol | 4.38 | 40.69 |
| Solyc10g047980.1.1 | Tomato | nucleus | 6.6 | 40.64 |
| Solyc10g047990.1.1 | Tomato | cytosol | 4.38 | 39.6 |
| Solyc07g041320.1.1 | Tomato | cytosol | 6.16 | 39.34 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 5.19 | 36.27 |
| Solyc04g024990.1.1 | Tomato | cytosol | 5.64 | 27.84 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:K4B789 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:Solyc02g067570.2 | EnsemblPlants:Solyc02g067570.2.1 |
| UniParc:UPI0002767582 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:37722081..37734397
Molecular Weight (calculated)
152605.0 Da
IEP (calculated)
5.132
GRAVY (calculated)
-0.769
Length
1348 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMLILNLSG HLVHRRENRK YGQSQLPGSG AGGGDGTGGG GTGASASTQK LTTNDALSYL KEVKDMFQDQ REKYDLFLDV MKDFKAQRID TTGVIARVKD
0101: LFKGHPNLIL GFNTFLPKGY EITLTDEEQA PPKKTVEFEE AISFVNKIKK RFQNDDHVYK SFLDILNMYR KEHKGITEVY KEVAALFEDH ADLLDEFTRF
0201: LPDNSGTASA TQTLFGRPSF QRYDERSSSI PLLRQSNMDK QRFRRDRIIN LHAERDLSVD PPEMEDDKTM MKLHKEQKRR AEKENRDRRG RDQDYREPDN
0301: ENNGDLSMHR STDKRKSARR VEEFGGTYDD KDGVKNMYSQ EFTFCERVKE RLRSPTDYQA FLKCLHIYST EIITRKELQS LVADLLGKYP DLMEGFNEFL
0401: ERCERIDGFL AGVMSKKSLW NEGHTSKSVK EEEKDKEQKR EIDGGKEKDR YKEKYWGKSI QELDLSNCQS CTPSYRLLPE DYPIPTASQR SELGAQVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAAKRA EELLNSLNDN SVGADGPIRI EDHFTALNLR CIERIYGDHG LDVVDILRKN
0601: LPVTLPVVLT RLKQKQEEWT KCRSDFNKVW AEIYSKNHYK SLDHRSFYFK QQDSKNLSTK SLVAEIKEIK DQKLKEDDMI LAIAAGSRHP ISPHLDFEFS
0701: DPEVHEDLYK FIKYSCKEVC STEEQLNKVL RFWTTFLEPM FGVTNRLHGS EAADDDILSK HHGLKRNGTS IGDSDGSPSM DASTTKSKKS KVVCNGDAKC
0801: SPQRLNSSRI SVANTDAHPK EDGLAADGEH LISSDAAASL GADNVCARSE STSGCNTRPR NGTAEDGQGA KCNIDNLPNS EGDISRSLPL VNNGFAEGSR
0901: ISGYNADSVD PSKNEKEEGE LSPNGDFEED NFVGFRDCAS LNGSMQYQSG GAEVVGCQDA AGDNDADADD EDSENVSEAG EDNSGSESAA DECSREEHEE
1001: EDDVDHDELD GKVESEGEVE GTSEANFIGG DGSVLQMSER FLLTSKPLAK HMVSPQCGGV KNGMQVFYGN DDFYVLFRLH QILYERLLSA KLNAASSESK
1101: WKTGKDTGSD PYARFIHALY SLLDGSADNA KFEDDCRSII GNQSYVLFTL DKLIYKLVKQ LQTVSSDELD GKLLQLYEYE RSRKSEKYVD SVYYEDAHVL
1201: LHEENIYRFV CTSSPTHLSI QLMDDGSEKS EAVAVYVDPN FSGYLHNDYL SVEHGKKESS AVMLKRNKRK HTNHDVSSAL CMVMENIILV NGLECKMASN
1301: SSKISYVLDT EDFFYRLGRK RRNISAGRLS YHGHERIERF HHVLTSLL
0101: LFKGHPNLIL GFNTFLPKGY EITLTDEEQA PPKKTVEFEE AISFVNKIKK RFQNDDHVYK SFLDILNMYR KEHKGITEVY KEVAALFEDH ADLLDEFTRF
0201: LPDNSGTASA TQTLFGRPSF QRYDERSSSI PLLRQSNMDK QRFRRDRIIN LHAERDLSVD PPEMEDDKTM MKLHKEQKRR AEKENRDRRG RDQDYREPDN
0301: ENNGDLSMHR STDKRKSARR VEEFGGTYDD KDGVKNMYSQ EFTFCERVKE RLRSPTDYQA FLKCLHIYST EIITRKELQS LVADLLGKYP DLMEGFNEFL
0401: ERCERIDGFL AGVMSKKSLW NEGHTSKSVK EEEKDKEQKR EIDGGKEKDR YKEKYWGKSI QELDLSNCQS CTPSYRLLPE DYPIPTASQR SELGAQVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAAKRA EELLNSLNDN SVGADGPIRI EDHFTALNLR CIERIYGDHG LDVVDILRKN
0601: LPVTLPVVLT RLKQKQEEWT KCRSDFNKVW AEIYSKNHYK SLDHRSFYFK QQDSKNLSTK SLVAEIKEIK DQKLKEDDMI LAIAAGSRHP ISPHLDFEFS
0701: DPEVHEDLYK FIKYSCKEVC STEEQLNKVL RFWTTFLEPM FGVTNRLHGS EAADDDILSK HHGLKRNGTS IGDSDGSPSM DASTTKSKKS KVVCNGDAKC
0801: SPQRLNSSRI SVANTDAHPK EDGLAADGEH LISSDAAASL GADNVCARSE STSGCNTRPR NGTAEDGQGA KCNIDNLPNS EGDISRSLPL VNNGFAEGSR
0901: ISGYNADSVD PSKNEKEEGE LSPNGDFEED NFVGFRDCAS LNGSMQYQSG GAEVVGCQDA AGDNDADADD EDSENVSEAG EDNSGSESAA DECSREEHEE
1001: EDDVDHDELD GKVESEGEVE GTSEANFIGG DGSVLQMSER FLLTSKPLAK HMVSPQCGGV KNGMQVFYGN DDFYVLFRLH QILYERLLSA KLNAASSESK
1101: WKTGKDTGSD PYARFIHALY SLLDGSADNA KFEDDCRSII GNQSYVLFTL DKLIYKLVKQ LQTVSSDELD GKLLQLYEYE RSRKSEKYVD SVYYEDAHVL
1201: LHEENIYRFV CTSSPTHLSI QLMDDGSEKS EAVAVYVDPN FSGYLHNDYL SVEHGKKESS AVMLKRNKRK HTNHDVSSAL CMVMENIILV NGLECKMASN
1301: SSKISYVLDT EDFFYRLGRK RRNISAGRLS YHGHERIERF HHVLTSLL
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.