Factsheet for Solyc06g082520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067570.2.1
Solyc02g087360.2.1
Solyc02g087370.1.1
Solyc02g087380.1.1
Solyc02g087390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	Solyc02g067570.2.1	AT3G01320.1	19962994
AT2G30470.1	Solyc02g087360.2.1	AT3G01320.1	19962994
AT2G30470.1	Solyc02g087370.1.1	AT3G01320.1	19962994
AT2G30470.1	Solyc02g087380.1.1	AT3G01320.1	19962994
AT2G30470.1	Solyc02g087390.1.1	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g08100.t01	Wine grape	nucleus	56.33	54.78
CDY02066	Canola	nucleus	45.33	48.85
CDY10738	Canola	nucleus	45.21	48.54
Bra018313.1-P	Field mustard	nucleus	45.33	48.48
Bra022801.1-P	Field mustard	nucleus	44.85	48.4
CDX84832	Canola	nucleus	44.73	48.15
AT2G30470.1	Thale cress	nucleus	44.85	47.97
CDX97828	Canola	nucleus	43.2	47.84
GSMUA_Achr5P27930_001	Banana	nucleus	32.78	47.76
CDY23997	Canola	nucleus	44.73	47.67
Solyc10g075030.1.1	Tomato	nucleus	48.88	46.99
Bra021635.1-P	Field mustard	nucleus	42.96	46.9
KRH30646	Soybean	nucleus	50.53	46.87
GSMUA_Achr8P01750_001	Banana	nucleus	47.34	46.67
CDY29672	Canola	nucleus	42.84	45.94
KRH72829	Soybean	nucleus	38.93	45.82
KRG98129	Soybean	nucleus	50.41	45.56
KRH17186	Soybean	nucleus	38.58	45.03
TraesCS2D01G105300.1	Wheat	nucleus	46.86	43.47
Os07t0679700-01	Rice	nucleus	47.57	42.36
TraesCS2B01G122500.1	Wheat	nucleus	47.22	42.0
TraesCS2A01G105600.1	Wheat	nucleus	46.86	41.73
EER99914	Sorghum	nucleus	47.1	41.59
Zm00001d022440_P005	Maize	plastid	46.86	41.12
HORVU2Hr1G017760.4	Barley	plastid	46.51	37.93
Zm00001d007173_P003	Maize	mitochondrion, nucleus	44.38	37.06
Solyc02g079020.2.1	Tomato	nucleus	37.51	30.39
Solyc10g006830.2.1	Tomato	cytosol, plastid	3.67	26.96
PGSC0003DMT400057590	Potato	nucleus	13.25	24.24
Zm00001d037893_P001	Maize	mitochondrion	6.86	20.71
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.98	20.14
Zm00001d045970_P001	Maize	mitochondrion	5.8	18.99
Solyc02g094460.1.1	Tomato	nucleus	6.15	18.98
Solyc06g083590.2.1	Tomato	nucleus	8.52	12.44
Solyc06g083600.1.1	Tomato	nucleus	8.05	10.97
Zm00001d029836_P001	Maize	plastid	0.47	4.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:K4CAB1	PFAM:PF02362	PFAM:PF07496
PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936
EnsemblPlantsGene:Solyc06g082520.2	EnsemblPlants:Solyc06g082520.2.1	UniParc:UPI00027659C0	InterPro:Znf_CW	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:48302516..48312333

Molecular Weight (calculated)

93507.5 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.688

Length

845 amino acids

Sequence
(BLAST)

001: MGSMICMNEL CRATTSVEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC RTCRKPIHCG CIASKYLYEY LDYGGVTCIK CAHHLDGHSI
101: RPIQIPGDDF PIGNLGSKSA KPLGIENKID ENDFERRRFM QTNEPGQLFH TQRNDKKQDP MLPIGNVGTC FSNLNQQNIG ASLFGKPDNE RPSQGVKDMY
201: DSINQPSLNF CLSTPIGTSS SGQPFLGGDV EGREQSKTSP FQQGQRARHI LPKPPKPSPT SGSESVKGMV SQARIARPPA EGRGGRSQLL PRYWPRITDQ
301: ELEQIAGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI
401: FSRIDPGGKL VMGFRKATNN VDMQDPQTPN LPSGNGSGET SFPGMADNFP NGGRTSDDTM NRQVPMSEKK KARNIGSKNR RLLMHADDAM ELRITWEEIQ
501: ELLRPSPTAK PNIVVVEDCE FEEYEEAPVF GKRTIFTARS SGDQEQWAQC DSCSKWRRLP LHILLPAKWT CSDNIWDSRR CSCAAPDEIS PRELEALLRV
601: GKDPKRRKLV ENNEDLESSG LDALATVAAS DMGDSIGDMG EPSVGATTKH PRHRAGCTCI VCIQPPSGKG KHHPTCKCNV CLTVKRRFKT LMLRKKKKQS
701: EREAELAQAK DQVPPKDESE TDGMTSGVEL LQMNHSENEH MNHSDNERNS NGDQVEEFGP GKGQLDLNCH PNRDDDMLAE ATAGMSMTSL VNATNLPLEY
801: LTQNRLESLG NSLLSQAASE SEGHHPDNGF GKTADVESGG KGAKA

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.