Factsheet for Solyc06g083590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097300.2.1
Solyc03g025570.2.1
Solyc03g115770.2.1
Solyc05g051790.2.1
Solyc05g053510.1.1
Solyc06g069690.2.1
Solyc08g067290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	Solyc01g097300.2.1	AT1G08780.1	10743655
AT3G24650.1	Solyc03g025570.2.1	AT3G22320.1	10743655
AT3G24650.1	Solyc05g051790.2.1	AT3G22320.1	10743655
AT3G24650.1	Solyc05g053510.1.1	AT3G22320.1	10743655
AT3G24650.1	Solyc08g067290.2.1	AT5G20910.1	10743655
AT3G24650.1	Solyc03g115770.2.1	AT5G61380.1	10743655
AT3G24650.1	Solyc06g069690.2.1	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051746	Potato	nucleus	91.36	91.21
Solyc06g083600.1.1	Tomato	nucleus	74.61	69.68
VIT_07s0005g05400.t01	Wine grape	nucleus	48.19	38.06
KRG99861	Soybean	nucleus	47.84	36.54
OQU89229	Sorghum	nucleus	24.87	35.82
KRH46807	Soybean	nucleus	46.98	35.74
CDY15121	Canola	nucleus	41.28	35.57
AT3G24650.1	Thale cress	nucleus	43.18	34.72
CDX93029	Canola	nucleus	42.31	34.12
Bra013248.1-P	Field mustard	nucleus	42.14	34.03
GSMUA_AchrUn_...	Banana	nucleus	36.1	30.83
GSMUA_Achr7P23040_001	Banana	nucleus	37.48	29.6
Zm00001d042396_P003	Maize	nucleus	35.23	29.52
EES04085	Sorghum	nucleus	34.72	28.67
TraesCS3D01G412800.1	Wheat	nucleus	33.85	28.32
HORVU3Hr1G092690.2	Barley	nucleus	33.33	28.3
TraesCS3B01G452200.1	Wheat	nucleus	33.33	28.05
TraesCS3A01G417300.1	Wheat	nucleus	33.16	27.75
Os01t0911700-02	Rice	nucleus	34.72	27.65
Solyc02g094460.1.1	Tomato	nucleus	11.23	23.72
Solyc10g006830.2.1	Tomato	cytosol, plastid	2.25	11.3
Solyc06g082520.2.1	Tomato	nucleus	12.44	8.52
Solyc10g075030.1.1	Tomato	nucleus	12.78	8.42
Solyc02g079020.2.1	Tomato	nucleus	12.95	7.19

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CAL4	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc06g083590.2	EnsemblPlants:Solyc06g083590.2.1
UniParc:UPI000276B5DC	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:48950537..48953413

Molecular Weight (calculated)

65443.1 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.672

Length

579 amino acids

Sequence
(BLAST)

001: MKRELNDVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS SSTSNSLPTE QSDPSSGWAV QKSDADEQDF DTISDQECLN
101: VMDLIDGDHE FLDPMISFFN QQQKEQANEE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS TKEGKKQLLR LILDWVEQHR
201: LQKKQMREEQ SIQNSAPFNF NNPNACFYNA SFTDSSSVMT GPIQGYFGDL NSNGSLFVPP YNQTMSGSST SQSWSQSQFI MANASQYNRF PENNITNNVA
301: IPDQPLFSAQ YDQYQIFDGS GERLARLGTC ATKEARKIRM ARQRRVPLHH YRHQTQNQRQ ISNEKSVMMG RKINNCAISQ ANNPGNWVYW PCAAAAPPIA
401: MVPLADTPQS LPMERSPVQS QKHQKHGSTD KRQACKTEKN LKFLMQKVLK QSDVGHLGRI VLPKKEAESH LPQLETRDGI SIAMEDIGTC RVWNMKYRFW
501: PNNKSRMYLL ENTGDFVVAN GLQEGDFIVI YADIKCGKYL IRGVKVRPNG AKSDGMQPAK KIVRKIAAVA SSPFAQAVG

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.