CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92689
KRH03510
KRH05327
KRH15708
KRH34096
KRH39324
KRH48354
KRH54582
KRH56889
KRH63298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	KRG92689	AT1G08780.1	10743655
AT3G24650.1	KRH34096	AT1G08780.1	10743655
AT3G24650.1	KRH39324	AT3G22320.1	10743655
AT3G24650.1	KRH48354	AT3G22320.1	10743655
AT3G24650.1	KRH05327	AT5G20910.1	10743655
AT3G24650.1	KRH15708	AT5G20910.1	10743655
AT3G24650.1	KRH03510	AT5G61380.1	10743655
AT3G24650.1	KRH54582	AT5G61380.1	10743655
AT3G24650.1	KRH56889	AT5G61380.1	10743655
AT3G24650.1	KRH63298	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99861	Soybean	nucleus	91.33	91.69
VIT_07s0005g05400.t01	Wine grape	nucleus	50.72	52.66
AT3G24650.1	Thale cress	nucleus	45.2	47.78
Bra013248.1-P	Field mustard	nucleus	44.94	47.7
CDX93029	Canola	nucleus	44.81	47.49
CDY15121	Canola	nucleus	41.92	47.47
Solyc06g083590.2.1	Tomato	nucleus	35.74	46.98
PGSC0003DMT400051746	Potato	nucleus	35.74	46.9
PGSC0003DMT400051934	Potato	nucleus	38.11	46.77
Solyc06g083600.1.1	Tomato	nucleus	37.32	45.81
OQU89229	Sorghum	nucleus	21.55	40.8
GSMUA_AchrUn_...	Banana	nucleus	33.51	37.61
Zm00001d042396_P003	Maize	nucleus	33.11	36.47
GSMUA_Achr7P23040_001	Banana	nucleus	34.56	35.88
EES04085	Sorghum	nucleus	32.85	35.66
TraesCS3D01G412800.1	Wheat	nucleus	31.14	34.25
HORVU3Hr1G092690.2	Barley	nucleus	30.62	34.16
Os01t0911700-02	Rice	nucleus	32.59	34.11
KRH37982	Soybean	cytosol, nucleus, plastid	1.97	34.09
TraesCS3A01G417300.1	Wheat	nucleus	30.75	33.81
TraesCS3B01G452200.1	Wheat	nucleus	30.49	33.72
KRG94672	Soybean	nucleus	12.22	28.01
KRH06856	Soybean	nucleus	11.96	26.92
KRG89628	Soybean	plastid	10.38	20.95
KRG89627	Soybean	nucleus	10.12	20.42
KRH72829	Soybean	nucleus	10.12	10.72
KRH17186	Soybean	nucleus	9.99	10.5
KRH30646	Soybean	nucleus	10.64	8.89
KRH10760	Soybean	nucleus	10.25	8.88
KRH21568	Soybean	nucleus	10.25	8.87
KRG98129	Soybean	nucleus	10.78	8.77
KRH65426	Soybean	nucleus	10.25	8.62
KRH76125	Soybean	nucleus	10.12	8.48

Protein Annotations

EntrezGene:100795226	MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A0R0IX89	EMBL:ACUP02005362	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_08G357600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH46807	ProteinID:KRH46807	ProteinID:KRH46807.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002337E10	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:47000228..47004501

Molecular Weight (calculated)

83853.0 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.788

Length

761 amino acids

Sequence
(BLAST)

001: MECEVELQGG DLHAGEVTDP NPIGFGNMED EHTLAVAERE MWLNSDQDEF LGVNDASMFY ADFPPLPDFP CMSSSSSSSS ATPLPVKTMT CSTTTTTSSS
101: SSSSSWAMLK SDAEEDAEKN HCNRYMHDQL DATLSSTASM EISQQQNPDP GLGGTVGECM DDVMDTFGYM ELLEANDFFD PASIFQNEGN ENPLEEFGTL
201: EEHVPFHEEQ HAMVHHQQGQ AEEEDHQVPF CEEIQGDEEG GDGVGVDDEM SNVFLEWLKS NKDSVSANDL RNVKLKKATL ESAARRLGGG KEAMKQLLKL
301: ILEWVQTSHL QNKRRKENNG SSISSVLQAQ FQDPSGQNNN QNTQSGSFAP ESNTCFNNQT PWLSSQTFAT DQAPLMVPPQ QFPQPMVGYV GDPYTSGAAS
401: NNISATHNHN NSNPYQPGAE QYHMLESAHS WPHSLFNVAS NYSQSFGDNN GLNPHGGFGG GGYGNNQYPY QFFHGPGDRL MRLGPSATKE ARKKRMARQR
501: RFLSHHRHHS GNHQNQGSDP HARMGGDNCN TALAAPHHAN PSANWMYWQA MIGGAAGPLA PVIPAEPPVV QPVVDRSAMQ TQNCHQNRVA SDRRQGWKPE
601: KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE THLPELEARD GISITMEDIG TSRVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVKCGK
701: YMIRGVKVRQ QGVKPETKKA GKSQKNQHGT GTNASSTAGT AANNGTSSSP KTKSEKSSKL I

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.