CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99861
KRH46807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	KRG99861	AT3G24650.1	10743655
AT5G20910.1	KRH46807	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05327	Soybean	cytosol, mitochondrion, nucleus	75.45	80.51
VIT_04s0008g02310.t01	Wine grape	cytosol	16.47	62.5
PGSC0003DMT400019033	Potato	cytosol	51.2	54.98
VIT_04s0008g02290.t01	Wine grape	cytosol	47.9	54.61
Solyc08g067290.2.1	Tomato	cytosol	50.0	53.53
AT5G20910.1	Thale cress	nucleus	47.9	51.61
CDX70951	Canola	cytosol	47.01	50.97
CDX88834	Canola	cytosol	47.31	50.97
HORVU6Hr1G042090.3	Barley	cytosol	16.77	46.28
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	45.21	45.76
EER98955	Sorghum	cytosol	44.01	45.37
Zm00001d005795_P002	Maize	cytosol	43.41	44.75
HORVU5Hr1G062970.1	Barley	cytosol	42.22	43.65
TraesCS5B01G214500.2	Wheat	cytosol	42.22	43.65
TraesCS5A01G216000.1	Wheat	cytosol	41.92	43.34
TraesCS5D01G223800.1	Wheat	cytosol	41.92	43.34
CDY04094	Canola	cytosol	17.66	42.14
Bra017440.1-P	Field mustard	cytosol	17.66	42.14
Os09t0434200-01	Rice	mitochondrion	41.62	41.37
Bra006585.1-P	Field mustard	cytosol	47.01	39.15
CDX87889	Canola	cytosol	27.25	37.14
GSMUA_Achr4P09670_001	Banana	mitochondrion	26.65	35.46

Protein Annotations

EntrezGene:100798732	MapMan:11.1.2.3	Gene3D:3.30.40.10	EMBL:ACUP02008631	EnsemblPlantsGene:GLYMA_14G105900	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	UniProt:I1M9B4	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlants:KRH15708	ProteinID:KRH15708	ProteinID:KRH15708.1	PFAM:PF17123	PFscan:PS50089
PANTHER:PTHR44679	SUPFAM:SSF57850	UniParc:UPI00023D4C7C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:10916033..10919283

Molecular Weight (calculated)

37603.8 Da

IEP (calculated)

7.711

GRAVY (calculated)

-0.203

Length

334 amino acids

Sequence
(BLAST)

001: MESEDLVKQE LEELQKQLGK KQKFEASVSS LKTLLQRTYP SASPALRKSF YSVLCRVATV LKTRYTAPGF WNAGLGLFEQ AHLLVSDPSE KEHLKACIAQ
101: AREHLHLEDN PSQTLRPADN QANRGYLFEG HLTVDPEPPQ PQWLVQSNLL TTAATLFAAE SSQASEANET TQDDATNMLE DLLNRLEEVV PLMVDVGPVA
201: PRAPPASKEV VANLPVITLT EEILANLGKD AECAICRENL VLNDKMQELP CKHTFHPPCL KPWLFYPLCG RMSTILVPSV GMSCKLMIMP MRAGRSVKRK
301: LKKRGKVLKM QFEVVNTCMF KWPFNVWLTI WLFM

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.