CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93029
CDY15121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	CDX93029	AT3G24650.1	10743655
AT5G20910.1	CDY15121	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04094	Canola	cytosol	34.69	60.71
CDX70951	Canola	cytosol	70.61	56.17
CDX88834	Canola	cytosol	69.8	55.16
AT5G20910.1	Thale cress	nucleus	64.9	51.29
HORVU6Hr1G042090.3	Barley	cytosol	21.22	42.98
VIT_04s0008g02290.t01	Wine grape	cytosol	44.9	37.54
Solyc08g067290.2.1	Tomato	cytosol	47.76	37.5
KRH05327	Soybean	cytosol, mitochondrion, nucleus	47.76	37.38
PGSC0003DMT400019033	Potato	cytosol	47.35	37.3
Zm00001d005795_P002	Maize	cytosol	42.86	32.41
EER98955	Sorghum	cytosol	42.04	31.79
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	42.04	31.21
TraesCS5A01G216000.1	Wheat	cytosol	39.59	30.03
TraesCS5B01G214500.2	Wheat	cytosol	39.59	30.03
HORVU5Hr1G062970.1	Barley	cytosol	39.18	29.72
TraesCS5D01G223800.1	Wheat	cytosol	39.18	29.72
Os09t0434200-01	Rice	mitochondrion	39.59	28.87
KRH15708	Soybean	cytosol, nucleus, plastid	37.14	27.25
GSMUA_Achr4P09670_001	Banana	mitochondrion	26.94	26.29
VIT_04s0008g02310.t01	Wine grape	cytosol	6.12	17.05
CDY07397	Canola	cytosol	7.76	15.32
CDY04206	Canola	cytosol	8.98	14.57
CDX81498	Canola	mitochondrion	13.47	13.2
CDY01893	Canola	mitochondrion	12.65	12.5
CDY12699	Canola	mitochondrion	14.69	9.84
CDX96042	Canola	mitochondrion	13.06	8.67

Protein Annotations

EnsemblPlants:CDX87889	EnsemblPlantsGene:GSBRNA2T00147122001	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR44679	ProteinID:CDX87889	ProteinID:CDX87889.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EE9487
MapMan:35.1	:	:	:	:	:

Description

BnaC06g09510D

Coordinates

chrLK031852:-:1240742..1242684

Molecular Weight (calculated)

27589.9 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.384

Length

245 amino acids

Sequence
(BLAST)

001: MTWPAGEQIS ASQYVFHDLG FITLCVLPPF WRLICLRRRD DPLLGFGLRL SLFEDAERLV SDASEKKHLK SCIEQAKEQL TEVDHQPTVR SQGYLFEGHL
101: TVDREPPQPQ CLVQQNLMSA FSSIVAGESS NAADVGNILG ETTNLINCLA PTSKYDIGSI LEDGGPPRAP LASKEVVKKL LVIVFSEEML KTLGAEHTFR
201: PLCLKPWLDE HNSCPICRHE LPTDDQKYES WKEREKEAEE ERKGA

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.