Factsheet for GSMUA_Achr4P09670_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P23040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT5G20910.1	GSMUA_AchrUn_...	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G042090.3	Barley	cytosol	26.69	55.37
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	59.76	45.45
TraesCS5D01G223800.1	Wheat	cytosol	49.4	38.39
TraesCS5B01G214500.2	Wheat	cytosol	49.4	38.39
HORVU5Hr1G062970.1	Barley	cytosol	49.4	38.39
TraesCS5A01G216000.1	Wheat	cytosol	49.4	38.39
Bra017440.1-P	Field mustard	cytosol	21.12	37.86
CDY04094	Canola	cytosol	21.12	37.86
EER98955	Sorghum	cytosol	47.41	36.73
Zm00001d005795_P002	Maize	cytosol	47.01	36.42
Os09t0434200-01	Rice	mitochondrion	47.41	35.42
VIT_04s0008g02290.t01	Wine grape	cytosol	40.64	34.81
KRH05327	Soybean	cytosol, mitochondrion, nucleus	43.03	34.5
CDX70951	Canola	cytosol	41.43	33.77
Solyc08g067290.2.1	Tomato	cytosol	41.43	33.33
PGSC0003DMT400019033	Potato	cytosol	41.04	33.12
AT5G20910.1	Thale cress	nucleus	40.64	32.9
CDX88834	Canola	cytosol	40.64	32.9
CDX87889	Canola	cytosol	26.29	26.94
KRH15708	Soybean	cytosol, nucleus, plastid	35.46	26.65
VIT_04s0008g02310.t01	Wine grape	cytosol	9.16	26.14
Bra006585.1-P	Field mustard	cytosol	40.24	25.19

Protein Annotations

EnsemblPlants:GSMUA_Achr4P09670_001	EnsemblPlants:GSMUA_Achr4T09670_001	EnsemblPlantsGene:GSMUA_Achr4G09670_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002958015	UniProt:M0SMI4	MapMan:11.1.2.3	:	:

Description

Putative E3 ubiquitin-protein ligase AIP2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09670_001]

Coordinates

chr4:-:6982714..6983931

Molecular Weight (calculated)

28229.3 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.401

Length

251 amino acids

Sequence
(BLAST)

001: MYSTICRVAT VLQSRYTAPG FWIIGLRLFE EMENLVTESS EKEERMRNCI AGARQHLNEM QTEVPLSDTR PAATISTSKN IYFLLSELHS QNLLTRLAVA
101: QDLASASGSS RGQEEHSNAG GVEIDESVRE SIDNMQEIGG STDLDSAIEA SLQVCFALIS SSYHMACKFI GDRPPPPASE EIIARLGSET ECAVCWENLA
201: VDDKMQELPC KHLFHPPCLK PWLDEHNSCP ICRHELRTDD HAYEIWKERE R

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.