Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G092690.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20910.1 | HORVU3Hr1G092690.2 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017440.1-P | Field mustard | cytosol | 62.81 | 54.29 |
| CDY04094 | Canola | cytosol | 62.81 | 54.29 |
| HORVU5Hr1G062970.1 | Barley | cytosol | 95.87 | 35.91 |
| EER98955 | Sorghum | cytosol | 87.6 | 32.72 |
| Zm00001d005795_P002 | Maize | cytosol | 85.12 | 31.79 |
| Os09t0434200-01 | Rice | mitochondrion | 87.6 | 31.55 |
| GSMUA_Achr8P24580_001 | Banana | cytosol, mitochondrion, nucleus | 82.64 | 30.3 |
| VIT_04s0008g02290.t01 | Wine grape | cytosol | 72.73 | 30.03 |
| KRH05327 | Soybean | cytosol, mitochondrion, nucleus | 74.38 | 28.75 |
| Solyc08g067290.2.1 | Tomato | cytosol | 73.55 | 28.53 |
| PGSC0003DMT400019033 | Potato | cytosol | 72.73 | 28.3 |
| CDX70951 | Canola | cytosol | 68.59 | 26.95 |
| GSMUA_Achr4P09670_001 | Banana | mitochondrion | 55.37 | 26.69 |
| AT5G20910.1 | Thale cress | nucleus | 66.94 | 26.13 |
| CDX88834 | Canola | cytosol | 66.12 | 25.81 |
| CDX87889 | Canola | cytosol | 42.98 | 21.22 |
| Bra006585.1-P | Field mustard | cytosol | 65.29 | 19.7 |
| KRH15708 | Soybean | cytosol, nucleus, plastid | 46.28 | 16.77 |
| VIT_04s0008g02310.t01 | Wine grape | cytosol | 0.83 | 1.14 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G042090.3 | EnsemblPlantsGene:HORVU6Hr1G042090 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000B47B537 | UniProt:A0A287U1H2 | MapMan:11.1.2.3 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:233925218..233925955
Molecular Weight (calculated)
13739.2 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.731
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: QDQGIAPQPK VPPASKEVVA NLPVVTVTEE VIARLGSETE CAVCRENLVV DDKMQELPCK HLFHPPCLKP WLDENNSCPI CRHELRTDDH AYESRKERER
101: EEEEDRKGAA NAVRGGEFMY I
101: EEEEDRKGAA NAVRGGEFMY I
001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV
Arabidopsis Description
AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.