CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99861
KRH46807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	KRG99861	AT3G24650.1	10743655
AT5G20910.1	KRH46807	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15708	Soybean	cytosol, nucleus, plastid	80.51	75.45
HORVU6Hr1G042090.3	Barley	cytosol	28.75	74.38
Bra017440.1-P	Field mustard	cytosol	30.35	67.86
CDY04094	Canola	cytosol	30.35	67.86
VIT_04s0008g02290.t01	Wine grape	cytosol	63.26	67.58
PGSC0003DMT400019033	Potato	cytosol	66.13	66.56
Solyc08g067290.2.1	Tomato	cytosol	64.86	65.06
CDX70951	Canola	cytosol	63.26	64.29
AT5G20910.1	Thale cress	nucleus	63.58	64.19
CDX88834	Canola	cytosol	63.26	63.87
VIT_04s0008g02310.t01	Wine grape	cytosol	16.93	60.23
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	59.74	56.67
HORVU5Hr1G062970.1	Barley	cytosol	55.59	53.87
TraesCS5B01G214500.2	Wheat	cytosol	55.59	53.87
EER98955	Sorghum	cytosol	55.59	53.7
TraesCS5D01G223800.1	Wheat	cytosol	55.27	53.56
TraesCS5A01G216000.1	Wheat	cytosol	55.27	53.56
Zm00001d005795_P002	Maize	cytosol	54.63	52.78
Os09t0434200-01	Rice	mitochondrion	54.31	50.6
Bra006585.1-P	Field mustard	cytosol	62.94	49.13
CDX87889	Canola	cytosol	37.38	47.76
GSMUA_Achr4P09670_001	Banana	mitochondrion	34.5	43.03

Protein Annotations

EntrezGene:100800189	MapMan:11.1.2.3	Gene3D:3.30.40.10	EMBL:ACUP02010726	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G220500
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7MNB0	EnsemblPlants:KRH05327	ProteinID:KRH05327	ProteinID:KRH05327.1	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233E227	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:37250614..37253671

Molecular Weight (calculated)

34991.5 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.487

Length

313 amino acids

Sequence
(BLAST)

001: MESEDLVKQE LEELQKQLGK KLKFEASISS LKSLLQRTYP SASPALRKSF YLVICRVATV LKTRYTAPGF WNAGLGLFEQ AHLLVSEPSE KEKLKACIAQ
101: AREHLHLEDN PSQALQPSDN QANRGYLFEG HLTVDPEPPQ PQWLVQSNLL TTAATLFAAE SSQAPAANET TQEDAANMLQ DLLNRLEEVV PLMVDGGPVA
201: PKAPPASKEV VANLPVITLT EEILANLGKD AECAICRENL VLNDKMQELP CKHTFHPPCL KPWLDEHNSC PICRHELQTD DHAYESWKER EKEAEEERKG
301: AENAIRGGEY MYV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.