Factsheet for GSMUA_Achr8P24580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P23040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	GSMUA_Achr7P23040_001	AT3G24650.1	10743655
AT5G20910.1	GSMUA_AchrUn_...	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G042090.3	Barley	cytosol	30.3	82.64
TraesCS5B01G214500.2	Wheat	cytosol	62.42	63.78
TraesCS5A01G216000.1	Wheat	cytosol	62.42	63.78
HORVU5Hr1G062970.1	Barley	cytosol	62.12	63.47
TraesCS5D01G223800.1	Wheat	cytosol	61.82	63.16
Bra017440.1-P	Field mustard	cytosol	26.67	62.86
CDY04094	Canola	cytosol	26.67	62.86
EER98955	Sorghum	cytosol	60.0	61.11
Zm00001d005795_P002	Maize	cytosol	59.7	60.8
Solyc08g067290.2.1	Tomato	cytosol	57.27	60.58
PGSC0003DMT400019033	Potato	cytosol	56.97	60.45
VIT_04s0008g02310.t01	Wine grape	cytosol	16.06	60.23
Os09t0434200-01	Rice	mitochondrion	60.91	59.82
GSMUA_Achr4P09670_001	Banana	mitochondrion	45.45	59.76
KRH05327	Soybean	cytosol, mitochondrion, nucleus	56.67	59.74
VIT_04s0008g02290.t01	Wine grape	cytosol	52.73	59.39
AT5G20910.1	Thale cress	nucleus	53.94	57.42
CDX70951	Canola	cytosol	53.33	57.14
CDX88834	Canola	cytosol	53.03	56.45
KRH15708	Soybean	cytosol, nucleus, plastid	45.76	45.21
Bra006585.1-P	Field mustard	cytosol	52.73	43.39
CDX87889	Canola	cytosol	31.21	42.04

Protein Annotations

EnsemblPlants:GSMUA_Achr8P24580_001	EnsemblPlants:GSMUA_Achr8T24580_001	EnsemblPlantsGene:GSMUA_Achr8G24580_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000295B9B2	UniProt:M0TTB1	MapMan:11.1.2.3

Description

E3 ubiquitin-protein ligase AIP2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G24580_001]

Coordinates

chr8:+:28728561..28733615

Molecular Weight (calculated)

36909.6 Da

IEP (calculated)

4.600

GRAVY (calculated)

-0.497

Length

330 amino acids

Sequence
(BLAST)

001: MGSEQAVMEE LQALQRKLGK KQSFEEAVSS IASLVRSRYP SASPSLRKSM YSTVCRVATV LQTRYTAPGF WLLGLRLFEE VENLVTEPSE KQNMTKCIAR
101: AQENLNEMET EVTLSDRRTT ESRFLFEGHL TVDPEPALPA WLVAQNLLTT LAVAQDWASV SESSRGQEEN SNTTESARGD ELPGSVRELI NNMQEIGGFL
201: DLDNAIEASL QEIGAGPQRP PPASKEVVAN LPVVTVTEEI MARLGSETEC AVCRENLAIG DKMQELPCKH LFHPPCLKPW LDEHNSCPIC RHELRTDDHA
301: YESWKERERE AEEERKGAAN ALRGGEFMYV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.