Factsheet for TraesCS5B01G214500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G417300.1
TraesCS3B01G452200.1
TraesCS3D01G412800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	TraesCS3A01G417300.1	AT3G24650.1	10743655
AT5G20910.1	TraesCS3B01G452200.1	AT3G24650.1	10743655
AT5G20910.1	TraesCS3D01G412800.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G216000.1	Wheat	cytosol	99.69	99.69
TraesCS5D01G223800.1	Wheat	cytosol	99.38	99.38
HORVU5Hr1G062970.1	Barley	cytosol	97.52	97.52
EER98955	Sorghum	cytosol	83.9	83.64
Zm00001d005795_P002	Maize	cytosol	82.35	82.1
Os09t0434200-01	Rice	mitochondrion	81.73	78.57
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	63.78	62.42
CDY04094	Canola	cytosol	25.7	59.29
Bra017440.1-P	Field mustard	cytosol	25.7	59.29
VIT_04s0008g02290.t01	Wine grape	cytosol	50.46	55.63
KRH05327	Soybean	cytosol, mitochondrion, nucleus	53.87	55.59
Solyc08g067290.2.1	Tomato	cytosol	52.32	54.17
PGSC0003DMT400019033	Potato	cytosol	52.01	54.02
CDX70951	Canola	cytosol	50.46	52.92
CDX88834	Canola	cytosol	49.23	51.29
AT5G20910.1	Thale cress	nucleus	49.23	51.29
VIT_04s0008g02310.t01	Wine grape	cytosol	13.62	50.0
GSMUA_Achr4P09670_001	Banana	mitochondrion	38.39	49.4
KRH15708	Soybean	cytosol, nucleus, plastid	43.65	42.22
Bra006585.1-P	Field mustard	cytosol	49.23	39.65
CDX87889	Canola	cytosol	30.03	39.59

Protein Annotations

MapMan:11.1.2.3	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009737	GO:GO:0009788	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5B01G214500	EnsemblPlants:TraesCS5B01G214500.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr5B:+:387363938..387367437

Molecular Weight (calculated)

36162.7 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.576

Length

323 amino acids

Sequence
(BLAST)

001: MSATAGDEAA VAERLEALRR KLGKKQHFEE AVADLAATLR DRYAGASPAL RESMYSTVCR VATVLQTRYT APGFWRAGLN LFVATEKLLT NPAEKERLKT
101: CILRAREHLD EKENEESMPT NREPDTRFLF EGHLTVGQEP PPPAWLVAQN LTRELNILAE PSGDQNGNNT RTELRPEEMT PAIMNFLNTL SGDAELESAL
201: EASLQGITAQ PKVPPASKEV VANLPVVTVT EEVIARLGSE TECAVCRENL VVDDKMQELP CKHLFHPPCL KPWLDENNSC PICRHELRTD DHAYESRKER
301: EREEEEDRKG AANAVRGGEF MYI

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.