Factsheet for Zm00001d005795_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042396_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	Zm00001d042396_P003	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98955	Sorghum	cytosol	93.83	93.83
HORVU6Hr1G042090.3	Barley	cytosol	31.79	85.12
TraesCS5A01G216000.1	Wheat	cytosol	82.41	82.66
TraesCS5D01G223800.1	Wheat	cytosol	82.41	82.66
TraesCS5B01G214500.2	Wheat	cytosol	82.1	82.35
HORVU5Hr1G062970.1	Barley	cytosol	80.86	81.11
Os09t0434200-01	Rice	mitochondrion	76.23	73.51
Bra017440.1-P	Field mustard	cytosol	27.47	63.57
CDY04094	Canola	cytosol	27.47	63.57
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	60.8	59.7
KRH05327	Soybean	cytosol, mitochondrion, nucleus	52.78	54.63
CDX70951	Canola	cytosol	51.85	54.55
Solyc08g067290.2.1	Tomato	cytosol	52.16	54.17
PGSC0003DMT400019033	Potato	cytosol	51.85	54.02
VIT_04s0008g02290.t01	Wine grape	cytosol	48.77	53.92
CDX88834	Canola	cytosol	50.31	52.58
AT5G20910.1	Thale cress	nucleus	49.69	51.94
VIT_04s0008g02310.t01	Wine grape	cytosol	13.89	51.14
GSMUA_Achr4P09670_001	Banana	mitochondrion	36.42	47.01
KRH15708	Soybean	cytosol, nucleus, plastid	44.75	43.41
CDX87889	Canola	cytosol	32.41	42.86
Bra006585.1-P	Field mustard	cytosol	50.31	40.65

Protein Annotations

EntrezGene:100280915	MapMan:11.1.2.3	Gene3D:3.30.40.10	UniProt:B6SPB5	ncoils:Coil	EMBL:EU954580
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009788	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM22134.1
PFAM:PF13639	PFscan:PS50089	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000182AD43	EnsemblPlantsGene:Zm00001d005795
EnsemblPlants:Zm00001d005795_P002	EnsemblPlants:Zm00001d005795_T002	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Protein binding protein

Coordinates

chr2:-:188910705..188919424

Molecular Weight (calculated)

36355.8 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.545

Length

324 amino acids

Sequence
(BLAST)

001: MSATATDEAA VEARLQELRG RLGKKQHFEE AVNELAAAVR DRYAGASPAL RKAMYSTVCR VATVLQTRYT APGFWHVGLN LFVGIEKLVS NPAEKEHLKT
101: CISRAREHLD EKENEDSVPS NREADTRFLF EGHLTVGQEP PPPAWLVAQN LTRELSILTE SSGDQDGSNN RTVPRAEEIT PAIMNLLETI SGDRDLETAL
201: EESLQGIIEY PQRAPPASKE VVANLPVIAV TEEVMSRLGS ETECAVCREN LVVDDKMQEL PCKHLFHPLC LKPWLDENNS CPICRHELRT DDHVYESRKE
301: REREEEEDRR GAANAVRGGE FIYI

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.