Factsheet for PGSC0003DMT400019033

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400051746
PGSC0003DMT400051934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	PGSC0003DMT400051746	AT3G24650.1	10743655
AT5G20910.1	PGSC0003DMT400051934	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067290.2.1	Tomato	cytosol	93.89	93.59
HORVU6Hr1G042090.3	Barley	cytosol	28.3	72.73
VIT_04s0008g02310.t01	Wine grape	cytosol	19.61	69.32
VIT_04s0008g02290.t01	Wine grape	cytosol	63.02	66.89
KRH05327	Soybean	cytosol, mitochondrion, nucleus	66.56	66.13
Bra017440.1-P	Field mustard	cytosol	28.94	64.29
CDY04094	Canola	cytosol	28.94	64.29
CDX70951	Canola	cytosol	62.38	62.99
AT5G20910.1	Thale cress	nucleus	62.06	62.26
CDX88834	Canola	cytosol	61.41	61.61
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	60.45	56.97
EER98955	Sorghum	cytosol	54.98	52.78
TraesCS5B01G214500.2	Wheat	cytosol	54.02	52.01
Zm00001d005795_P002	Maize	cytosol	54.02	51.85
TraesCS5A01G216000.1	Wheat	cytosol	53.7	51.7
HORVU5Hr1G062970.1	Barley	cytosol	53.7	51.7
TraesCS5D01G223800.1	Wheat	cytosol	53.7	51.7
KRH15708	Soybean	cytosol, nucleus, plastid	54.98	51.2
Os09t0434200-01	Rice	mitochondrion	53.05	49.11
Bra006585.1-P	Field mustard	cytosol	61.09	47.38
CDX87889	Canola	cytosol	37.3	47.35
GSMUA_Achr4P09670_001	Banana	mitochondrion	33.12	41.04

Protein Annotations

EntrezGene:102597599	MapMan:11.1.2.3	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009737	GO:GO:0009788	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1ABI5	PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400007377
PGSC:PGSC0003DMG400007377	EnsemblPlants:PGSC0003DMT400019033	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000295306C	RefSeq:XP_006361527.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007377]

Coordinates

chr8:-:40789569..40793605

Molecular Weight (calculated)

34780.1 Da

IEP (calculated)

4.818

GRAVY (calculated)

-0.504

Length

311 amino acids

Sequence
(BLAST)

001: MEEELKQKIQ ELQKQLGKKQ MFEEAVSSIK SLLLQHYPSA SPSLRNSFYM VVCRVATILK TRYTMPGFWN AGLGLFIEAE HLVSGSAGKK HLQSCITQAR
101: EQLAEVQNES ENTTSTENGS TRRFLFEGHL TVDPEPEQPA WLEQSHLLTA AAALLAGESS QGDPANVNDT EGASNILEHL VARLNNIIPE ILDDGPSAPR
201: PPPASKQVVA NLPVTTVTDE LLTKLGADAE CAICREELVV DDKMQELPCK HMFHPPCLKP WLDEHNSCPI CRHELLTDDH HYESWKEREK EAEEDRKGAA
301: NAIREGEYMY V

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.