Factsheet for Solyc08g067290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g083590.2.1
Solyc06g083600.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT5G20910.1	Solyc06g083600.1.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019033	Potato	cytosol	93.59	93.89
HORVU6Hr1G042090.3	Barley	cytosol	28.53	73.55
VIT_04s0008g02310.t01	Wine grape	cytosol	18.59	65.91
Bra017440.1-P	Field mustard	cytosol	29.49	65.71
CDY04094	Canola	cytosol	29.49	65.71
VIT_04s0008g02290.t01	Wine grape	cytosol	61.54	65.53
KRH05327	Soybean	cytosol, mitochondrion, nucleus	65.06	64.86
CDX70951	Canola	cytosol	62.5	63.31
AT5G20910.1	Thale cress	nucleus	61.86	62.26
CDX88834	Canola	cytosol	61.54	61.94
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	60.58	57.27
EER98955	Sorghum	cytosol	55.13	53.09
TraesCS5B01G214500.2	Wheat	cytosol	54.17	52.32
Zm00001d005795_P002	Maize	cytosol	54.17	52.16
TraesCS5A01G216000.1	Wheat	cytosol	53.85	52.01
HORVU5Hr1G062970.1	Barley	cytosol	53.85	52.01
TraesCS5D01G223800.1	Wheat	cytosol	53.85	52.01
KRH15708	Soybean	cytosol, nucleus, plastid	53.53	50.0
Os09t0434200-01	Rice	mitochondrion	52.56	48.81
CDX87889	Canola	cytosol	37.5	47.76
Bra006585.1-P	Field mustard	cytosol	61.22	47.63
GSMUA_Achr4P09670_001	Banana	mitochondrion	33.33	41.43

Protein Annotations

MapMan:11.1.2.3	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009719	GO:GO:0009737	GO:GO:0009788	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4CLV5	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc08g067290.2	EnsemblPlants:Solyc08g067290.2.1	UniParc:UPI000276C277	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase AIP2 [Source:Projected from Arabidopsis thaliana (AT5G20910) UniProtKB/Swiss-Prot;Acc:Q8RXD3]

Coordinates

chr8:-:56348651..56352143

Molecular Weight (calculated)

35206.6 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.558

Length

312 amino acids

Sequence
(BLAST)

001: MMEEELKHKI QELQKQLGKK QMFEEAVSSI RSLLLQYYPS ASPSLRNSFY LVVCRVATIL KTRYTMPGFW NAGLGLFIEA EHLVSGSAEK KHLQSCITQA
101: REQLAEVQNE SQNTTSTEND STRRFLFEGH LTVDPEPEQP AWLEQSHILT AAAALLGGES SQGDPSNVND TEGARNILEQ LVARLDNMIP EILEDGPSAP
201: RPPPASKQVV ANLPVNTVTD ELLKQLGADA ECAICREELV VDDKMQELPC KHMFHPPCLK PWLDEHNSCP ICRHELLTDD HHYESWKERE KEAEEDRKGA
301: ANAVREGEYM YV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.